Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_D18
(258 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0512 - 22852009-22852140,22852686-22852820,22853739-228537... 65 8e-12
08_01_0711 - 6275052-6276401 27 2.1
09_06_0328 + 22365308-22365415,22365743-22366018,22366166-223664... 26 3.6
09_01_0097 - 1450544-1452058 26 3.6
11_01_0460 + 3561490-3564104,3564162-3564558 25 6.3
10_08_0474 - 18173154-18173255,18173861-18173961,18174118-181741... 25 6.3
06_01_0113 + 886899-886906,887029-887107,887390-887458,887547-88... 25 6.3
04_04_0210 + 23616407-23618851 25 6.3
03_06_0011 - 30995083-30995108,30995850-30996038,30996063-30998856 25 6.3
12_01_0011 + 90859-91169,92075-92622,92701-92803,92899-92998,934... 25 8.4
11_01_0011 + 95001-95311,96217-96764,96843-96945,97041-97140,975... 25 8.4
10_01_0188 - 2086765-2087743,2087774-2088195 25 8.4
08_02_1144 + 24670224-24670607,24670723-24670928,24671211-246713... 25 8.4
01_06_1683 - 39134826-39135664,39136202-39136278,39136391-391364... 25 8.4
01_01_1122 + 8899946-8900043,8900191-8900291,8900416-8900945 25 8.4
>01_05_0512 -
22852009-22852140,22852686-22852820,22853739-22853787,
22854043-22854128,22854211-22854291,22854394-22854496,
22854577-22854684,22854799-22854919,22855532-22855712
Length = 331
Score = 64.9 bits (151), Expect = 8e-12
Identities = 24/45 (53%), Positives = 38/45 (84%)
Frame = +1
Query: 7 EFQHLRNHSVEPLSTFLDFITYSYIIDNIILLITGTLHQRPISEL 141
E++H+ + EPLSTFL +ITY ++IDN++L++TGTLH+R ++EL
Sbjct: 81 EYKHMMCQATEPLSTFLQYITYGHMIDNVVLIVTGTLHERDVNEL 125
Score = 34.7 bits (76), Expect = 0.010
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 140 LIPKCHPLGSFEQMEAIHVAATTAELYNAV 229
L+ KCHPLG F+ + ++ VA ELY V
Sbjct: 125 LLEKCHPLGMFDSIASLAVAQNMRELYRLV 154
>08_01_0711 - 6275052-6276401
Length = 449
Score = 27.1 bits (57), Expect = 2.1
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -2
Query: 68 VIKSKNVDKGSTEWLRRCW 12
+IKS+N+ +G+T W + C+
Sbjct: 348 IIKSENIMEGATRWPKHCY 366
>09_06_0328 +
22365308-22365415,22365743-22366018,22366166-22366417,
22366542-22366939,22367028-22368021,22368199-22368409,
22368515-22368749,22368874-22368996,22369190-22369310,
22369416-22369625
Length = 975
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2
Query: 5 LSSNIYATILWNPCQHFWTL*H 70
L S + + W+PC HF T H
Sbjct: 213 LGSTFFRRLAWSPCGHFITTTH 234
>09_01_0097 - 1450544-1452058
Length = 504
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 257 EWVQRSVHQILHYTALQ*WQQHG 189
EWV R VH +L + A+ + HG
Sbjct: 362 EWVPRDVHYVLRHRAVGCFLMHG 384
>11_01_0460 + 3561490-3564104,3564162-3564558
Length = 1003
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 107 RVLCIKDLFLNLIPKCHPLGSFEQMEAIHVAATTAELYNAVFGGH 241
RVLC + LN+ C +E+M+ VAA +++ G+
Sbjct: 959 RVLCCLNSVLNIGLFCTKTSPYERMDMREVAARLSKIKEVFLSGN 1003
>10_08_0474 -
18173154-18173255,18173861-18173961,18174118-18174170,
18174291-18174364,18174628-18174692,18174916-18174982,
18175295-18175387,18176696-18176794,18176877-18176921,
18177055-18177178,18177304-18177363,18178982-18179061,
18179347-18179349
Length = 321
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 113 LCIKDLFLNLIPKCHPLGSFEQMEAIHVAATTAELYNA 226
L +D + L+P G E +HV A T+ YNA
Sbjct: 115 LVFRDAYEYLLPWKRLFGVHESQGCVHVMAGTSSDYNA 152
>06_01_0113 +
886899-886906,887029-887107,887390-887458,887547-887636,
887725-887863,888466-888568,888664-888716,888801-888867,
889147-889255,889499-889567,889676-889745,889833-889952,
890052-890201,890611-890873
Length = 462
Score = 25.4 bits (53), Expect = 6.3
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1
Query: 4 IEFQHLRNHSVEPLSTFLDFITYSYIIDNIILLITGTLHQRPISELDSQM 153
++ ++ R +SV PLS + YSY+ N G QR + ELD Q+
Sbjct: 292 VDQKNARRYSVGPLSNGRPAVNYSYLSANTPARAAGV--QRKL-ELDHQV 338
>04_04_0210 + 23616407-23618851
Length = 814
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 228 TALYSSAVVAATWIASIC 175
TAL S A AA W+A +C
Sbjct: 616 TALLSGAAGAARWLADVC 633
>03_06_0011 - 30995083-30995108,30995850-30996038,30996063-30998856
Length = 1002
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -2
Query: 185 PPSVQMSLEDGIWESSSEIGL*CKVPVINRMMLSII*LYVIKSKNVDKGSTEWLRR 18
PPS +++ G S EI I ++L++I LY+ K + S +RR
Sbjct: 690 PPSDSATVDSGGGFSKIEIASITSASAIVAVLLALIILYIYTRKCASRQSRRSIRR 745
>12_01_0011 +
90859-91169,92075-92622,92701-92803,92899-92998,
93453-93529,93608-93686,94108-94226,94330-94423
Length = 476
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +1
Query: 193 CCCHYCRAV*CSIWWTL 243
CCCH + C +W TL
Sbjct: 8 CCCHAMVGMPCYLWRTL 24
>11_01_0011 +
95001-95311,96217-96764,96843-96945,97041-97140,
97595-97671,97750-97828,98250-98368,98472-98565
Length = 476
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +1
Query: 193 CCCHYCRAV*CSIWWTL 243
CCCH + C +W TL
Sbjct: 8 CCCHAMVGMPCYLWRTL 24
>10_01_0188 - 2086765-2087743,2087774-2088195
Length = 466
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +2
Query: 140 LIPKCHPLGSFEQMEAIHVAATTAELYNAVFGGHSFGPI 256
+I + L F ++A+ + + + E+YN +F +FG I
Sbjct: 265 IISRIENLARFGSVKAVRLNSLSKEVYNYLFKKLAFGSI 303
>08_02_1144 +
24670224-24670607,24670723-24670928,24671211-24671310,
24671539-24672864
Length = 671
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 25 NHSVEPLSTFLDFITYSYIIDNIILLITGTLH 120
++++E LS LD IT D ++ ITG+LH
Sbjct: 285 SNTLESLSLVLDIIT-----DELVAFITGSLH 311
>01_06_1683 -
39134826-39135664,39136202-39136278,39136391-39136441,
39136581-39136654,39136782-39136870,39137152-39137234,
39138067-39138241,39138348-39138501
Length = 513
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +2
Query: 125 DLFLNLIPKCHPLGSFEQMEAIHVAATTAELYNAVFGGHSFGPI 256
D F + + H LGS + H + + +YN GG G I
Sbjct: 385 DFFSQAMQQQHGLGSIDNASLEHSTGSNSVVYNGDNGGGGGGYI 428
>01_01_1122 + 8899946-8900043,8900191-8900291,8900416-8900945
Length = 242
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +1
Query: 193 CCCHYCRAV*CSIWWTL 243
CCCH A C +W L
Sbjct: 93 CCCHAMAAAPCYLWRAL 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,749,300
Number of Sequences: 37544
Number of extensions: 139853
Number of successful extensions: 386
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 64
effective length of database: 12,390,532
effective search space used: 260201172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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