Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_D18
         (258 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006611-1|AAK85455.2|  348|Caenorhabditis elegans Vacuolar h at...    86   4e-18
Z67879-3|CAA91789.2|  278|Caenorhabditis elegans Hypothetical pr...    29   0.46 
AL132876-31|CAI79186.1|  120|Caenorhabditis elegans Hypothetical...    28   1.1  
AC006679-9|AAK84461.1|  153|Caenorhabditis elegans Hypothetical ...    27   1.8  
AL132943-5|CAB81977.1|  367|Caenorhabditis elegans Hypothetical ...    27   2.4  
U23529-12|AAL13323.1|  561|Caenorhabditis elegans Cation diffusi...    25   5.6  
U23529-11|AAK39165.1|  519|Caenorhabditis elegans Cation diffusi...    25   5.6  
AC091125-8|AAP46267.1|  353|Caenorhabditis elegans Hypothetical ...    25   5.6  
AC091125-7|AAK27890.1|  510|Caenorhabditis elegans Hypothetical ...    25   5.6  
Z72505-3|CAA96610.1|  340|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U39996-4|AAA81090.2|  266|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>AC006611-1|AAK85455.2|  348|Caenorhabditis elegans Vacuolar h
           atpase protein 16 protein.
          Length = 348

 Score = 85.8 bits (203), Expect = 4e-18
 Identities = 38/45 (84%), Positives = 44/45 (97%)
 Frame = +1

Query: 7   EFQHLRNHSVEPLSTFLDFITYSYIIDNIILLITGTLHQRPISEL 141
           EF HLRN+++EPL+TFLD+ITYSY+IDNIILLITGTLHQRPISEL
Sbjct: 78  EFTHLRNNALEPLATFLDYITYSYMIDNIILLITGTLHQRPISEL 122



 Score = 59.3 bits (137), Expect = 4e-10
 Identities = 26/30 (86%), Positives = 28/30 (93%)
 Frame = +2

Query: 140 LIPKCHPLGSFEQMEAIHVAATTAELYNAV 229
           LI KCHPLGSFEQMEAIH+A+T AELYNAV
Sbjct: 122 LINKCHPLGSFEQMEAIHIASTPAELYNAV 151


>Z67879-3|CAA91789.2|  278|Caenorhabditis elegans Hypothetical
           protein C05E7.4 protein.
          Length = 278

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 119 IKDLFLNLIPKCHPLGSFEQMEAIHVAATTA-ELYNAVFGGHSFGP 253
           I  +F+ L+PK  PLG F QM ++++    A + + +V+ G    P
Sbjct: 93  IDQVFVFLLPKIIPLGLFFQMLSVYITVLAAFDCFYSVYCGTKCEP 138


>AL132876-31|CAI79186.1|  120|Caenorhabditis elegans Hypothetical
           protein Y105E8A.32 protein.
          Length = 120

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 180 WRLSMLLPLLQSCIMQYLVDTPLDP 254
           W L ++LPL+QSCI     + P+ P
Sbjct: 3   WLLLLVLPLVQSCIPMVPPEAPIVP 27


>AC006679-9|AAK84461.1|  153|Caenorhabditis elegans Hypothetical
           protein R13A5.10 protein.
          Length = 153

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 146 PKCHPLGSFEQMEAIHVAATTAELYNAVFGGHSF 247
           P C     + +++AI+  AT+ +  N  FG H F
Sbjct: 81  PMCMGAALWSRVDAIYYGATSQDAANIGFGDHEF 114


>AL132943-5|CAB81977.1|  367|Caenorhabditis elegans Hypothetical
           protein Y116F11B.8 protein.
          Length = 367

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 255 MGPKECPPNTALYSSAVVAATWIASICSNEP 163
           +GP E PPN+   SSA   +  + S    EP
Sbjct: 210 LGPMETPPNSPGTSSAATTSAPVTSPAPTEP 240


>U23529-12|AAL13323.1|  561|Caenorhabditis elegans Cation diffusion
           facilitator familyprotein 1, isoform b protein.
          Length = 561

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 30  FCGTLVNIFGLYNIQLYYR*HHSIDYGY 113
           F G L+N+FG++N+  +   H    +G+
Sbjct: 221 FIGLLINLFGMFNLSGHGHSHGGGSHGH 248


>U23529-11|AAK39165.1|  519|Caenorhabditis elegans Cation diffusion
           facilitator familyprotein 1, isoform a protein.
          Length = 519

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 30  FCGTLVNIFGLYNIQLYYR*HHSIDYGY 113
           F G L+N+FG++N+  +   H    +G+
Sbjct: 179 FIGLLINLFGMFNLSGHGHSHGGGSHGH 206


>AC091125-8|AAP46267.1|  353|Caenorhabditis elegans Hypothetical
           protein Y67D2.1b protein.
          Length = 353

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 19  LRNHSVEPLSTFLDFITYSYIIDNIILLITGTLHQRP 129
           L  H+  P S FL+ +     + + I+   G L QRP
Sbjct: 219 LAEHADRPFSEFLEQMGVGKTLQSFIINTIGILQQRP 255


>AC091125-7|AAK27890.1|  510|Caenorhabditis elegans Hypothetical
           protein Y67D2.1a protein.
          Length = 510

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 19  LRNHSVEPLSTFLDFITYSYIIDNIILLITGTLHQRP 129
           L  H+  P S FL+ +     + + I+   G L QRP
Sbjct: 219 LAEHADRPFSEFLEQMGVGKTLQSFIINTIGILQQRP 255


>Z72505-3|CAA96610.1|  340|Caenorhabditis elegans Hypothetical
           protein C50C10.4 protein.
          Length = 340

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 43  LSTFLDFITYSYIIDNIILLIT 108
           LST   FI + YII  +I++IT
Sbjct: 28  LSTLQAFIPFLYIIPTVIVMIT 49


>U39996-4|AAA81090.2|  266|Caenorhabditis elegans Hypothetical
           protein C56E6.2 protein.
          Length = 266

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/44 (20%), Positives = 23/44 (52%)
 Frame = -2

Query: 152 IWESSSEIGL*CKVPVINRMMLSII*LYVIKSKNVDKGSTEWLR 21
           +W+++ +    C VP+  R   + + +Y +  +N  +   +WL+
Sbjct: 109 VWDTAGQERFRCMVPMYMRNADAALIVYDVTDRNTFEDVEKWLK 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,728,557
Number of Sequences: 27780
Number of extensions: 125522
Number of successful extensions: 351
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,740,198
effective HSP length: 64
effective length of database: 10,962,278
effective search space used: 230207838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)