Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_D16
         (357 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    25   2.6  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    25   3.5  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    25   4.6  
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma...    24   6.1  
SPAC4G8.02c |sss1||translocon gamma subunit Sss1|Schizosaccharom...    24   6.1  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    24   8.0  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    24   8.0  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    24   8.0  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    24   8.0  

>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 131 LAFSKMAWYDGVLRPIFNTQ 72
           + F+K+ WY   L  +FNT+
Sbjct: 33  ITFAKLRWYGKTLLEVFNTE 52


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 63  QVALRIEDRPQHSIVPSHLGECQCVG 140
           Q+    +D    SIVP+H  E  C+G
Sbjct: 157 QILFLFKDHMNTSIVPAHDSEISCLG 182


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 163 SGRWRRSEPTHWH 125
           SG W  S P HWH
Sbjct: 380 SGSWWISSPDHWH 392


>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 354

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 62  PSGVAY*RSAATLHRTKPSWR 124
           P G+ Y   A++LH   P+WR
Sbjct: 25  PLGLRYRSDASSLHLFTPTWR 45


>SPAC4G8.02c |sss1||translocon gamma subunit
          Sss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 70

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 10 DDLAQRCAQYKKDGCHFAKWRCV 78
          DDL Q    + K+G HF K RCV
Sbjct: 6  DDLFQIPKNFYKEGSHFIK-RCV 27


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +1

Query: 43  KDGCHFAKWRCVLKIGRNTPSYQAILENANVLARYASICQ 162
           K  CHF   +C LK+  +  +  A+  N++ ++    + Q
Sbjct: 148 KHSCHFNILKCFLKLLMSLSAKLAVSSNSSTVSSLELVSQ 187


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -1

Query: 207 SGKTSGSTIGTIRLTLADGGVASQHIGILQDG 112
           SG T  STIG   +  A G   SQH   L  G
Sbjct: 387 SGNTDSSTIGYAAVFAAAGKFFSQHSCDLASG 418


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 250 DFCHILSAVQVVLAIRQNLRLNYWHDTPDSGR 155
           +F   +S +Q    I  N R   +H T +SG+
Sbjct: 170 EFSKAISLLQAYATISTNKRFMVYHQTKNSGK 201


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +2

Query: 83  RSAATLHRTKPSWRMPMCWLATPPSARVRRIVPIVEPEVLPDGEH-DLDRAQNVTEVVLA 259
           +SA  L +   S R+P    A  P  +V      ++ +++ DG+H + D + +  E V++
Sbjct: 61  KSALELEKELFSERIPESQSAAEPVLKVENSENDLDEKLVLDGQHVEGDHSSDTEEEVVS 120

Query: 260 AVYKALS 280
              K L+
Sbjct: 121 EDQKQLN 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,579,174
Number of Sequences: 5004
Number of extensions: 30600
Number of successful extensions: 94
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)