Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_D13
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   2.6  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    25   4.5  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    25   6.0  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    25   6.0  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    25   7.9  

>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 138 LYKNGMATVKQPVFVSDVAQAIVNAARDPDTKCQLYQ 248
           + K+G A V Q +  S V +A+ +   DP+   QL Q
Sbjct: 444 MIKHGYANVAQTIIASPVYEALKSYRDDPNLAYQLKQ 480


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/57 (22%), Positives = 23/57 (40%)
 Frame = +3

Query: 186 DVAQAIVNAARDPDTKCQLYQALGPKRYLLADLVDWFYKLMRKDEKWGYYRYDMKYD 356
           ++ Q  ++   D  T   +   + PK++L     DW         +W  YR   K+D
Sbjct: 695 ELLQNYIDHTSDVQTAALIAAFVVPKKFLDKRAEDWTESYRELLNRWKLYRERAKFD 751


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 420 LHWEGIEKESTTDVPLPGVPT 482
           L W+G     TTD PL  VPT
Sbjct: 346 LPWQGKVIAGTTDKPLSSVPT 366


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 60  QTYMVLKIDS*DHLQPTGGIHNNLMP 137
           Q Y  L +DS D++   G IH +L P
Sbjct: 201 QYYAALIVDSIDYMHGRGVIHRDLKP 226


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/23 (39%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +1

Query: 229 QNANYIKLLVQNATC-WLIWLIG 294
           +NAN  ++ ++NATC  + W++G
Sbjct: 303 ENANKTQINIENATCSKMTWIMG 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,184,492
Number of Sequences: 5004
Number of extensions: 45861
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)