Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_D13
(482 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1223 + 35033273-35033353,35033455-35033539,35033613-350336... 44 6e-05
02_05_1108 - 34166672-34166695,34166864-34166932,34167031-341671... 38 0.004
02_05_1103 - 34136955-34136978,34137147-34137215,34137314-341374... 38 0.004
02_05_1100 - 34108581-34108584,34109646-34109701,34110470-341105... 38 0.004
07_01_0552 + 4109906-4109983,4110422-4110484,4110496-4110525,411... 30 1.1
03_06_0166 - 32112140-32112877,32112888-32112977 29 1.5
01_01_1046 - 8246740-8247504 29 2.6
08_01_0852 + 8387990-8388218,8388337-8388358,8388722-8388781,839... 27 7.9
04_01_0206 + 2507827-2508705,2508844-2509902 27 7.9
>02_05_1223 +
35033273-35033353,35033455-35033539,35033613-35033683,
35034400-35034531,35034654-35034769,35035128-35035251,
35035349-35035417,35035508-35035628,35035707-35035843
Length = 311
Score = 44.0 bits (99), Expect = 6e-05
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = +3
Query: 132 MPLYKNGMATVKQPVFVSDVAQAIVNAARDPDTKC-QLYQALGPKRYLLADLVDWFYKLM 308
+PL +G + QPV+V DVA AIVN+ +D T + Y+ GP+ Y + +L + Y+ +
Sbjct: 153 LPLVDSGSTKI-QPVYVVDVAAAIVNSLKDDGTSMGKTYELGGPEIYTVHELAELMYETI 211
Query: 309 RK 314
R+
Sbjct: 212 RE 213
Score = 37.1 bits (82), Expect = 0.007
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Frame = +2
Query: 8 GECAVKEEFPTATIIKASDIYGSEDRFLR---SFATNWRY 118
GE +V +EFP ATI++ + + G+EDR L FA NW +
Sbjct: 113 GEESVLKEFPEATIMRPATMIGTEDRILNRWAQFAKNWGF 152
>02_05_1108 -
34166672-34166695,34166864-34166932,34167031-34167154,
34167192-34167256,34167726-34167854,34168473-34168547,
34171613-34171777,34171864-34172063,34172866-34172963,
34173719-34173819,34173915-34174040
Length = 391
Score = 37.9 bits (84), Expect = 0.004
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 168 QPVFVSDVAQAIVNAARDPDTKC-QLYQALGPKRYLLADLVDWFYK 302
QPV+V DVA AIVN+ +D T + Y GP+ Y + DL + Y+
Sbjct: 322 QPVYVVDVAAAIVNSLKDDGTSMGKSYGLGGPEIYTVHDLAELMYE 367
>02_05_1103 -
34136955-34136978,34137147-34137215,34137314-34137437,
34137475-34137539,34138009-34138137,34138756-34138830,
34141896-34142060,34142147-34142346,34143149-34143246,
34144002-34144102,34144198-34144323
Length = 391
Score = 37.9 bits (84), Expect = 0.004
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 168 QPVFVSDVAQAIVNAARDPDTKC-QLYQALGPKRYLLADLVDWFYK 302
QPV+V DVA AIVN+ +D T + Y GP+ Y + DL + Y+
Sbjct: 322 QPVYVVDVAAAIVNSLKDDGTSMGKSYGLGGPEIYTVHDLAELMYE 367
>02_05_1100 -
34108581-34108584,34109646-34109701,34110470-34110509,
34110955-34111066,34111690-34111767,34112004-34112088,
34112596-34112664,34112763-34112886,34112924-34112988,
34113458-34113586,34114205-34114279,34117344-34117508,
34117595-34117794,34118597-34118694,34119450-34119550,
34119649-34119774
Length = 508
Score = 37.9 bits (84), Expect = 0.004
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 168 QPVFVSDVAQAIVNAARDPDTKC-QLYQALGPKRYLLADLVDWFYK 302
QPV+V DVA AIVN+ +D T + Y GP+ Y + DL + Y+
Sbjct: 322 QPVYVVDVAAAIVNSLKDDGTSMGKSYGLGGPEIYTVHDLAELMYE 367
>07_01_0552 + 4109906-4109983,4110422-4110484,4110496-4110525,
4110567-4110621,4111046-4111143,4112259-4112417,
4112518-4112577,4113436-4113624,4113749-4113802,
4113959-4114045,4114149-4114881,4115282-4115373,
4115739-4115812,4116097-4116199,4116342-4117204,
4117649-4117724,4117861-4117972,4118092-4118168,
4118272-4118352,4118710-4118789,4118860-4118875
Length = 1059
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 120 HNNLMPLYKNGMATVKQPVFVSDVAQAIVNAARDPDTKCQLYQALG 257
H + PLYK ++ P+F+S + ++ V TK LY+A G
Sbjct: 881 HARIKPLYKQRFFSILMPIFLSKIKESTVMT-----TKLVLYRAFG 921
>03_06_0166 - 32112140-32112877,32112888-32112977
Length = 275
Score = 29.5 bits (63), Expect = 1.5
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +3
Query: 279 DLVDWFYKLMRKDEKWGYYRYDMKYDPVFPI 371
D + W+ + +DE+W + YD+ P+ P+
Sbjct: 74 DTIIWYCHVGGEDEEWARHEYDIGTQPLLPL 104
>01_01_1046 - 8246740-8247504
Length = 254
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 155 GYCKAASFRIRCGSSYCKRCT*PRYKMPIISSSWSKTLPV 274
G C+ S+ IRCG ++C C ++ +S + L V
Sbjct: 33 GTCRRDSYCIRCGVAFCSHCCRYHHRHAAVSRWYDPLLRV 72
>08_01_0852 +
8387990-8388218,8388337-8388358,8388722-8388781,
8390054-8390177,8390268-8390358,8390521-8390610,
8390734-8390834,8391135-8391275
Length = 285
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 47 IIKASDIYGSEDRFLRSFATNWRYS 121
I+ ASD++G E LRSF N+ S
Sbjct: 69 IVLASDVFGFEAPLLRSFLVNYLLS 93
>04_01_0206 + 2507827-2508705,2508844-2509902
Length = 645
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -3
Query: 132 SSYYEYRQLVANDLKNLSSEPYMSEALMMVAVGNSSF 22
+SY Y+ ++ D+ EP++ ++M VG S +
Sbjct: 123 ASYVLYKHIIIGDVTTRGHEPFLLANVLMFVVGLSKY 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,050,495
Number of Sequences: 37544
Number of extensions: 290198
Number of successful extensions: 524
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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