Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_D13
         (482 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical ...    59   1e-09
Z22179-13|CAA80166.1|  164|Caenorhabditis elegans Hypothetical p...    30   0.77 
AF022980-10|AAG24193.1|  350|Caenorhabditis elegans Serpentine r...    27   7.1  
AF022976-8|AAC69087.2|  366|Caenorhabditis elegans Serpentine re...    27   7.1  
U88165-4|AAR30207.1|  700|Caenorhabditis elegans Maternal effect...    27   9.4  
U88165-3|AAK21393.1|  754|Caenorhabditis elegans Maternal effect...    27   9.4  
U34812-1|AAB01719.1|  754|Caenorhabditis elegans MES-3 protein.        27   9.4  
AF047652-5|AAC04391.2|  449|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical
           protein Y53G8AL.2 protein.
          Length = 431

 Score = 59.3 bits (137), Expect = 1e-09
 Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
 Frame = +3

Query: 138 LYKNGMATVKQPVFVSDVAQAIVNAARDPDTKCQLYQALGPKRYLLADLVDWFYKLMR-- 311
           LYK G  T K P++V DVA  I +A  DP  K   Y+ +GP  Y L++L+D+ YK     
Sbjct: 244 LYKKGEETYKMPIWVGDVAAGIQSAVNDPTAKGHTYEFVGPHCYQLSELIDFMYKKAHCL 303

Query: 312 KDEKWGYYRYDMKYDPVF 365
            D  + Y R+ M  DP F
Sbjct: 304 SDFGFRYKRHGMP-DPYF 320



 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 21/37 (56%), Positives = 27/37 (72%)
 Frame = +2

Query: 5   LGECAVKEEFPTATIIKASDIYGSEDRFLRSFATNWR 115
           LGE AV+EEFP ATII+ S IYG  D F++ + + WR
Sbjct: 199 LGEVAVREEFPEATIIRPSVIYGELDGFIQYYVSRWR 235


>Z22179-13|CAA80166.1|  164|Caenorhabditis elegans Hypothetical
           protein F58A4.10 protein.
          Length = 164

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +3

Query: 315 DEKWGYYRYDMKYDPVFPIKVALINLIS 398
           D+KWGY R + ++ PV  ++  L+++IS
Sbjct: 97  DDKWGYERPEERWLPVHTVETILLSVIS 124


>AF022980-10|AAG24193.1|  350|Caenorhabditis elegans Serpentine
           receptor, class j protein44 protein.
          Length = 350

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 312 KDEKWGYYRYDMKYDPVFPIKVALINLISP 401
           K  K+G YRY + Y  +F +  +++N++ P
Sbjct: 33  KSSKFGNYRYLLLYFAIFNLLYSIMNVLVP 62


>AF022976-8|AAC69087.2|  366|Caenorhabditis elegans Serpentine
           receptor, class w protein107 protein.
          Length = 366

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 214 AAFTIA*ATSDTKTGCFTVAMPFLYKGIKLL 122
           A  TI    +DT  GC  +A  F+ +G KL+
Sbjct: 272 ALLTITSFLADTPLGCIGIAKAFIQQGTKLM 302


>U88165-4|AAR30207.1|  700|Caenorhabditis elegans Maternal effect
           sterile protein3, isoform b protein.
          Length = 700

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 321 KWGYYRYDMKYDPVFPIKVALINLISPAYPL 413
           K+  Y +DMK + +F  ++ LI ++SP + L
Sbjct: 642 KYHQYIFDMKLNSLFEKQINLIAMVSPDWKL 672


>U88165-3|AAK21393.1|  754|Caenorhabditis elegans Maternal effect
           sterile protein3, isoform a protein.
          Length = 754

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 321 KWGYYRYDMKYDPVFPIKVALINLISPAYPL 413
           K+  Y +DMK + +F  ++ LI ++SP + L
Sbjct: 696 KYHQYIFDMKLNSLFEKQINLIAMVSPDWKL 726


>U34812-1|AAB01719.1|  754|Caenorhabditis elegans MES-3 protein.
          Length = 754

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 321 KWGYYRYDMKYDPVFPIKVALINLISPAYPL 413
           K+  Y +DMK + +F  ++ LI ++SP + L
Sbjct: 696 KYHQYIFDMKLNSLFEKQINLIAMVSPDWKL 726


>AF047652-5|AAC04391.2|  449|Caenorhabditis elegans Hypothetical
           protein C34H4.2 protein.
          Length = 449

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 19/49 (38%), Positives = 22/49 (44%)
 Frame = +3

Query: 141 YKNGMATVKQPVFVSDVAQAIVNAARDPDTKCQLYQALGPKRYLLADLV 287
           YKNG  TV Q   + D A   V +  DP     +    G   Y LADLV
Sbjct: 29  YKNG--TVYQVANLEDSANLYVASDDDPSNLRLIQIITGGNTYSLADLV 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,976,444
Number of Sequences: 27780
Number of extensions: 255322
Number of successful extensions: 555
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)