Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_D12
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    29   0.68 
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po...    29   0.68 
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    27   1.6  
SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.7  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    26   3.6  
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom...    26   3.6  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   3.6  
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1...    26   4.8  
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    25   6.3  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    25   8.4  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    25   8.4  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    25   8.4  

>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 119 ELIISILEYSLWVDVTGQCQGREGKYGYYNLHV 21
           +L  + L+ ++WV VT   +   G YGY  LH+
Sbjct: 212 DLYSNNLKDAVWVAVTNYMKNLVGNYGYTELHI 244


>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +3

Query: 339 LKLANKVYIANGNELNDQFAVVSRDVFNSE-VQNLNFGKNEEAANIINTWVEDHTNKRIX 515
           +   NK+Y   G       ++V +++ N E        +  EAA  +  W + H+N  I 
Sbjct: 1   MSTTNKIYFIAGGNRGIGLSLV-KELSNREGTVVFASARKPEAATELQEWSKSHSNVHII 59

Query: 516 NLVDPSSLDSSTQ 554
            L D SSL+S+ +
Sbjct: 60  KL-DISSLESANE 71


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
 Frame = +3

Query: 102 NGNDQFTARMFNEVVKKNPDKSVILSAFSVMIPLAQLAIASTGESHDELLKAI------- 260
           N N Q  A    + + KN   S++    S     + L IAS   +H+ +   I       
Sbjct: 59  NANIQLLALTLTDAIVKNCKTSIVREISSRTFTDSLLKIASDSTTHNRVRSRIAVLVNEW 118

Query: 261 -DFPNDNVTXAVFTDLNQKVRSIKGVDLKLANKVYIANGNEL 383
            +    +   ++  D+ +K+R +  VDL+   K      NEL
Sbjct: 119 AEIMKKDPNMSLMQDICEKIRKLDIVDLRAPKKPEKEAMNEL 160


>SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 105

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 380 FITVSNVYFISQFEINSFNRSYFLI*VSEYCXSYVV 273
           F+  S    IS  ++N   R Y+ I    YC  Y++
Sbjct: 4   FVFESLCAMISTLKVNKIERGYWFIQCLRYCFIYII 39


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 2   KHESHRQHEDYNNHI 46
           +H SHR+HE Y  H+
Sbjct: 148 RHGSHRRHEPYRTHL 162


>SPAC1805.16c |||purine nucleoside phosphorylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 431 HFRIKHISGHNSKLII*FI 375
           HF + H+ GH SKL   F+
Sbjct: 72  HFHVSHVPGHASKLYFAFL 90


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -1

Query: 466 AASSFLPKFKFCTSELNTSLDTTAN*SFNSLPLAMYTLLASLRSTPLIDLT 314
           A  +FL  F FC + +N SLD        +    +YTL+  L   P + +T
Sbjct: 289 ARLNFL-SFSFCVNPMNQSLDCNTTPHRRNASSIIYTLMYYLIIAPTLLIT 338


>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 455

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = -3

Query: 584 LKVNCIYENTLCATVQRTRIHQIXDTFIGVVFNPSIN 474
           +++  +  +T+   V R    +  DTF+G++F    N
Sbjct: 189 IRIEAVINDTVGTLVTRAYTSKESDTFMGIIFGTGTN 225


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = +3

Query: 369 NGNELNDQFAVVSRDVFNSEVQNLNFGKNE----EAANIINTWVEDHTNKR 509
           NG ++ D   VV   VF  + QN    KNE    EA+    T V D T  +
Sbjct: 279 NGKQVGDLTLVVKSAVFREDKQNDENEKNENEPIEASESAPTNVSDSTEPK 329


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 128 TCGELIISILEYSLWVDVTGQCQGREGKYGY 36
           TCG L+I I    LWV++T +    +G  G+
Sbjct: 22  TCGLLLIGIACNVLWVNMTARNILPKGNLGF 52


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +1

Query: 448 VKMKKQLTLLILGLKTTPINVS 513
           + + +QLT+L+ G+ +TPI V+
Sbjct: 77  ISIYQQLTILLFGVLSTPITVN 98


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = +3

Query: 270 NDNVTXAVFTDLNQKVRSIKGVDLKLANKVYIANGNELNDQFAVVSRDVFNSEVQNL 440
           ND +  A  +DL QK+         L N ++    ++  D+F+   R   +  + NL
Sbjct: 546 NDYIAQAGLSDLLQKIADTTDDKQALKNYLHSWKWDQQIDKFSTFIRKTLSETIDNL 602


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,262,629
Number of Sequences: 5004
Number of extensions: 43094
Number of successful extensions: 124
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)