Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_D11
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc...   160   2e-40
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    27   1.6  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    25   6.5  
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.6  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    25   8.6  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    25   8.6  

>SPBP8B7.24c |atg8||autophagy associated protein Atg8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score =  160 bits (388), Expect = 2e-40
 Identities = 68/116 (58%), Positives = 92/116 (79%)
 Frame = +2

Query: 116 MKFQYKEEHSFEKRKTEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 295
           M+ Q+K++ SFEKRKTE ++IR KYPDR+PVI EK  K+ +  +DKKKYLVPSDLTVGQF
Sbjct: 1   MRSQFKDDFSFEKRKTESQRIREKYPDRIPVICEKVDKSDIAAIDKKKYLVPSDLTVGQF 60

Query: 296 YFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDKDFFLYIAFSDENVYG 463
            ++IRKRI L PE A+F F++ ++PPT+A M ++Y+EH  +D FLYI +S EN +G
Sbjct: 61  VYVIRKRIKLSPEKAIFIFIDEILPPTAALMSTIYEEHKSEDGFLYITYSGENTFG 116


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -1

Query: 467 NIHKHFHQK--MLCRERNPCRDAPGRENP*LQMLVESHCSRKRKARPRDE 324
           N H+   +K  +L RERN C          L++L +++   KR+AR  +E
Sbjct: 291 NAHQLLEKKFEILKRERNECNAKIDELQDKLELLTDAYNREKRRARSLEE 340


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -3

Query: 216 STITGTRSGYFLRIFSPSVFLFSKECSSLYWNFIFVF 106
           S +   R+G+ + +    +++F  EC   Y N I +F
Sbjct: 163 SPLPSPRTGHSMLLVDSKLWIFGGECQGKYLNDIHLF 199


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 107 KTKMKFQYKEEHSFEKRKTEGEKIRRKYPDRVP 205
           K  M+ + K+  SFEKR     +++ K P R P
Sbjct: 63  KETMEEKKKKSSSFEKRDKRRVQLKEKSPLRTP 95


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = -2

Query: 511 HLKYNKSNI*NFK----ELISINIFIRKCYVEKEILVVMLLVERTHSCRCWWNH 362
           HLK   +++ N++    ++ S +   R+C   K I    +     HS  C W H
Sbjct: 10  HLKLKPADVENYQKICTQIFSCHFVPRRCSTCKRINKRSIRCLSCHSVGCLWGH 63


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 103 LRNNLTKKLLFSSTQSTATCFLFLRYS 23
           L+N +TK +  SS  S AT  L L Y+
Sbjct: 419 LKNRITKGIKISSINSGATMLLKLHYN 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,287,752
Number of Sequences: 5004
Number of extensions: 47395
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)