Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_D10
         (314 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    25   3.6  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    24   4.7  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    24   4.7  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    24   6.3  

>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 270 PNFIWLVRSTEPRALSLWFSLPVMGTLTIAPEVPSE 163
           PNF +L    EP A+ L F     G+   +  +PS+
Sbjct: 106 PNFYYLTGCLEPNAVLLMFKNGASGSYDCSLYLPSK 141


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 122  NSRVRRQAGALTINSDGTSGAMVKVPITGNENH-KLSALGSVDLT 253
            NS V +  G+ + +S  T      +PI   ENH  L++ GS  ++
Sbjct: 1439 NSPVTKVPGSSSTSSSSTQPINSTIPINPLENHGMLNSFGSTTVS 1483


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 95  YEDQPEQWANSRVRRQAGALTINSDGTSGAMVKVPITGN 211
           YE  PE + N   +R A AL  NS+   G+   V    N
Sbjct: 227 YEQDPEGFVNPYSKRGAAALA-NSENNKGSEAGVSAKTN 264


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 133 HPRVSPLLRLILILFDVVTRLFNKH 59
           H RV P L+   +L D +T  +N H
Sbjct: 255 HKRVIPFLQKPNLLMDFLTDAYNSH 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,149,010
Number of Sequences: 5004
Number of extensions: 19731
Number of successful extensions: 42
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)