Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_D09
         (431 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0CMD9 Cluster: Chromosome undetermined scaffold_21, wh...    33   3.4  
UniRef50_Q928E2 Cluster: Hypothetical gene; n=1; Listeria innocu...    32   5.9  

>UniRef50_A0CMD9 Cluster: Chromosome undetermined scaffold_21, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_21,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 727

 Score = 32.7 bits (71), Expect = 3.4
 Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
 Frame = +2

Query: 44  ISRLELPYYSSNP-VYNFNLLSFLLYSHGMQGF--RSQILLIIVHQLYVPLPYNPISFAS 214
           IS L   + +S P VYN NL+ F ++  G + +  + Q+++I+++ + + +P N   F  
Sbjct: 599 ISCLTDQFLASGPIVYNKNLIPFNIHIKGQKAYSAKMQMVVIVLNAIIIMIPENTKLFQG 658

Query: 215 VT 220
           +T
Sbjct: 659 IT 660


>UniRef50_Q928E2 Cluster: Hypothetical gene; n=1; Listeria
           innocua|Rep: Hypothetical gene - Listeria innocua
          Length = 112

 Score = 31.9 bits (69), Expect = 5.9
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +3

Query: 144 LKYC*S*YTNYMSHYHITLLASLQSLKRR 230
           LKYC S  +  M++YHITL A   S+KR+
Sbjct: 13  LKYCISLLSGVMTNYHITLSAFENSVKRK 41


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 387,424,038
Number of Sequences: 1657284
Number of extensions: 7267830
Number of successful extensions: 15686
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15586
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21075479950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)