Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_D09
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    26   2.2  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    26   2.8  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    25   6.6  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    25   6.6  
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa...    24   8.7  

>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = -3

Query: 294 QRWDYPNTYKGCMEENAGSNKAASLVTEAKLIGLYGNGTYNWCTMI 157
           +RW + +  K C++          ++    ++G+ GNG +N+CT+I
Sbjct: 329 KRWQWSDLLKSCLDLRVWP----FILMYFGIVGV-GNGIFNYCTLI 369


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -1

Query: 320 SRYIRPLISKGGIIQIHTKVAWK--KMLAAIRP 228
           S+Y+RP+  KGG++ +      K  ++L  I P
Sbjct: 801 SQYLRPMFPKGGVVSVTLSALIKTPRLLELISP 833


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 282 NPTFGYQGSYVTRLN 326
           NP+ GY+GSY+T  N
Sbjct: 234 NPSTGYKGSYLTVTN 248


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 171 NYMSHYHITLLASLQSLKRRPYCCQH 248
           NY++ YH TL AS   L   PY  ++
Sbjct: 83  NYVAVYHFTLNASKPVLTPSPYLTRY 108


>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
 Frame = +2

Query: 68  YSSNPVYNFNLLSFLLYSHGMQGFRSQILLIIVHQLYVPLPYNPISFASVTKEAALLLPA 247
           YS  P   F+     ++ HG+  F   + L    + +  +    +   S+TKE    LP 
Sbjct: 68  YSPKPNNPFSFKR-RIWLHGVLRFHRPLHLFQTSECHELIQEESVKSPSITKEVEACLPK 126

Query: 248 FSSM-QPLYVFG*SHLWISRVLCNEIKYLTRCINRFKTI 361
            S + +P       H++I R + +    L  CI   +T+
Sbjct: 127 SSFLTKPTSEKQTKHVYIRRKIYDSQHQL--CIEEDRTL 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,685,125
Number of Sequences: 5004
Number of extensions: 33234
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)