Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_D09
         (431 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0389 - 20845490-20845600,20845697-20846006,20846097-208462...    31   0.40 
03_05_0629 + 26248960-26249236,26249766-26249894,26250291-262508...    28   2.8  
06_02_0323 + 14381803-14382091,14382116-14382348,14382364-143824...    27   4.9  
09_01_0150 - 2244757-2245303,2252925-2253277                           27   6.5  
08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137...    27   6.5  
06_01_0361 - 2583296-2583652,2584269-2584461,2584725-2584978           27   6.5  

>05_04_0389 -
           20845490-20845600,20845697-20846006,20846097-20846242,
           20846319-20846426,20846508-20846615,20846997-20847109,
           20847340-20847437,20847530-20847714,20847811-20847953,
           20848293-20848377,20848486-20848624,20848686-20848780,
           20848894-20849037,20849114-20849206,20849310-20849376,
           20849529-20849641,20849750-20849845,20853885-20854058
          Length = 775

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 116 YSHGMQGFRSQILLIIVHQ-LYVPLPYNPISFASVTKEAALLLPAFSSMQPLYV 274
           +   MQ F ++I+ ++ H+ LY P    PI  + +  E  ++ PAF +  P YV
Sbjct: 149 FKQHMQNFVTKIVTMMKHEGLYYPQG-GPIIISQIENEYQMIEPAFGASGPRYV 201


>03_05_0629 +
           26248960-26249236,26249766-26249894,26250291-26250847,
           26250933-26251250
          Length = 426

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = +2

Query: 11  VWVAYCFYVI*ISRLE--LPYYSS--NPVYNFNLLSFLLYSHGMQGFRS-QILLIIVHQL 175
           +W    FY+     L   L Y+ S  +P +NF++  + +Y H  QGF S Q L   + QL
Sbjct: 232 LWTGVFFYLYGWEFLNEALLYHLSRTDPRHNFSIYFYHIYLHHQQGFSSIQKLASFLPQL 291

Query: 176 YVPL 187
            V L
Sbjct: 292 IVQL 295


>06_02_0323 +
           14381803-14382091,14382116-14382348,14382364-14382460,
           14382900-14383024
          Length = 247

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 167 HQLYVPLPYNPISFASVTKEAALLLP 244
           H LY+PLP   IS+A ++ +  L LP
Sbjct: 25  HGLYMPLPVPSISWADISVDFVLGLP 50


>09_01_0150 - 2244757-2245303,2252925-2253277
          Length = 299

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +2

Query: 71  SSNPVYNFNLLSFLLYSHGMQGFRSQILLIIVHQLYVPLPYNPISFASVTKEAALLLPAF 250
           S+ P YNF    FLL S     F + + L++V    V L  N ++   +  E  L   A 
Sbjct: 7   STPPFYNFLKEGFLLPSRNRSLFVA-VFLLVVASTSVLLLVNDLAVQPIAMEILLDAKAL 65

Query: 251 SSMQPL 268
           ++  P+
Sbjct: 66  NTTDPM 71


>08_02_1426 +
           27009720-27010787,27011846-27012517,27012999-27013793,
           27014914-27014943,27018095-27019987
          Length = 1485

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 330 KYLISLHKTLDIQRWDYPNTY 268
           KYLI+L+   +I+ WD+  TY
Sbjct: 284 KYLIALNGLCNIEEWDWIKTY 304


>06_01_0361 - 2583296-2583652,2584269-2584461,2584725-2584978
          Length = 267

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 146 QILLIIVHQLYVPLPYNPISFASVTKEAALLLPAFSSMQPL 268
           Q LL+ VH      P +  +FAS+    +L+LP   S  PL
Sbjct: 44  QALLLFVHSKLTMCPDHRFAFASLGDTVSLVLPHALSDPPL 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,037,969
Number of Sequences: 37544
Number of extensions: 186028
Number of successful extensions: 367
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)