Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_D09
         (431 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane hel...    29   6.8  
AB065531-1|BAC05778.1|  235|Homo sapiens seven transmembrane hel...    29   6.8  

>AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 346

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 411 CMYL*VDLCIYKYSSL*IVLNLLMHLVKYL 322
           CMYL V LC+  Y S+ + L + +H+  YL
Sbjct: 88  CMYLCVFLCVCVYVSVSVCLCVYLHISVYL 117


>AB065531-1|BAC05778.1|  235|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 235

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 192 ITLLASLQSLKRRPYCCQHFLPCNLCMYLD 281
           + +L SL  LKR P+C  H L  + C++ D
Sbjct: 156 LAVLPSLFLLKRLPFCHSHLLSHSYCLHQD 185


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,201,167
Number of Sequences: 237096
Number of extensions: 1075279
Number of successful extensions: 1368
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3430805640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)