Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_D09
(431 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021503-5|CAA16416.2| 325|Caenorhabditis elegans Hypothetical ... 29 1.4
Z82261-2|CAB05145.1| 336|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z82261-1|CAB05144.1| 336|Caenorhabditis elegans Hypothetical pr... 29 1.9
U97008-5|AAB52311.2| 338|Caenorhabditis elegans Serpentine rece... 29 1.9
Z81113-5|CAB03282.3| 404|Caenorhabditis elegans Hypothetical pr... 28 2.5
AF164430-1|AAF82632.1| 404|Caenorhabditis elegans LIS-1 protein. 28 2.5
AF047657-14|AAK18952.1| 331|Caenorhabditis elegans Serpentine r... 28 2.5
Z72511-3|CAA96657.1| 610|Caenorhabditis elegans Hypothetical pr... 28 3.3
U28971-3|AAK68670.1| 319|Caenorhabditis elegans Hypothetical pr... 28 3.3
AL021566-1|CAA16501.1| 328|Caenorhabditis elegans Hypothetical ... 28 3.3
Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical pr... 27 5.8
Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical pr... 27 5.8
Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical pr... 27 5.8
Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical pr... 27 5.8
AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin pr... 27 5.8
>AL021503-5|CAA16416.2| 325|Caenorhabditis elegans Hypothetical
protein Y68A4A.9 protein.
Length = 325
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +2
Query: 65 YYSSNPVYNFNLLSFLLYSHGMQGFRSQILLIIVHQLYVPLPYNPISFASVTKEAALLLP 244
Y+ ++ NL+ F HG+ S ++++ VH+ Y Y+P + A ++P
Sbjct: 258 YFDYQNQFHNNLIVFAFAVHGIA---STLIMVFVHRPYRDFVYSPFRRLFGSGSTAYVIP 314
Query: 245 AFS 253
A S
Sbjct: 315 AVS 317
>Z82261-2|CAB05145.1| 336|Caenorhabditis elegans Hypothetical
protein C35D6.2 protein.
Length = 336
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 44 ISRLELPYYSSNPVYNFNLLSFLLYSHGMQGFRSQILLIIVHQLY 178
I + + YY+ P +N L S + + GF S I+++IV + Y
Sbjct: 253 IISMPMIYYTYTPFFNAILNSIMFITVSSHGFISTIVMLIVQKPY 297
>Z82261-1|CAB05144.1| 336|Caenorhabditis elegans Hypothetical
protein C35D6.1 protein.
Length = 336
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 44 ISRLELPYYSSNPVYNFNLLSFLLYSHGMQGFRSQILLIIVHQLY 178
I + + YY+ P +N L S + + GF S I+++IV + Y
Sbjct: 253 IISMPMIYYTYTPFFNAILNSIMFITVSSHGFISTIVMLIVQKPY 297
>U97008-5|AAB52311.2| 338|Caenorhabditis elegans Serpentine
receptor, class h protein231 protein.
Length = 338
Score = 28.7 bits (61), Expect = 1.9
Identities = 19/77 (24%), Positives = 36/77 (46%)
Frame = +2
Query: 17 VAYCFYVI*ISRLELPYYSSNPVYNFNLLSFLLYSHGMQGFRSQILLIIVHQLYVPLPYN 196
+ + ++I IS + L Y FN L F+ S + G S ++++ VH Y ++
Sbjct: 244 ITFILFLIPISMIILFVYFRYQNQIFNNLIFV--SLAIHGIASTLIMVFVHSPYRDFAFS 301
Query: 197 PISFASVTKEAALLLPA 247
PI + + +LP+
Sbjct: 302 PIYWFTKKPPIVRVLPS 318
>Z81113-5|CAB03282.3| 404|Caenorhabditis elegans Hypothetical
protein T03F6.5 protein.
Length = 404
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 330 KYLISLHKTLDIQRWDYPNTYKGCMEENAGSNKAASLVT 214
K L+S L I+ WD+ TY C++ G S VT
Sbjct: 161 KQLVSCSSDLSIKLWDFGQTY-DCLKSLKGHEHTVSSVT 198
>AF164430-1|AAF82632.1| 404|Caenorhabditis elegans LIS-1 protein.
Length = 404
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 330 KYLISLHKTLDIQRWDYPNTYKGCMEENAGSNKAASLVT 214
K L+S L I+ WD+ TY C++ G S VT
Sbjct: 161 KQLVSCSSDLSIKLWDFGQTY-DCLKSLKGHEHTVSSVT 198
>AF047657-14|AAK18952.1| 331|Caenorhabditis elegans Serpentine
receptor, class h protein127 protein.
Length = 331
Score = 28.3 bits (60), Expect = 2.5
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 53 LELPYYSSNPVYNFNLLSFLLYSHGMQGFRSQILLIIVHQLY 178
L L Y +N + + + S M GF S +LL++VHQ Y
Sbjct: 266 LSLFYLVPMGYHNQAITNGIFVSVSMHGFLSTVLLLLVHQPY 307
>Z72511-3|CAA96657.1| 610|Caenorhabditis elegans Hypothetical
protein F55A11.3 protein.
Length = 610
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 360 IVLNLLMHL-VKYLISLHKTLDIQRWDYPNTY 268
I+L L++H+ +KYL+ +H + Q WD Y
Sbjct: 181 ILLALVLHVTIKYLLHMHDLRNPQSWDNKAVY 212
>U28971-3|AAK68670.1| 319|Caenorhabditis elegans Hypothetical
protein B0244.7 protein.
Length = 319
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 92 FNLLSFLLYSHGMQGFRSQILLIIVHQLY 178
F +LSFL + GM G I + +VH +Y
Sbjct: 127 FEMLSFLSFIGGMVGTTLTIYIAVVHPMY 155
>AL021566-1|CAA16501.1| 328|Caenorhabditis elegans Hypothetical
protein F08E10.1 protein.
Length = 328
Score = 27.9 bits (59), Expect = 3.3
Identities = 15/63 (23%), Positives = 30/63 (47%)
Frame = +2
Query: 65 YYSSNPVYNFNLLSFLLYSHGMQGFRSQILLIIVHQLYVPLPYNPISFASVTKEAALLLP 244
Y++ ++ NL+ F HG+ S ++++ VH+ Y Y+P + ++P
Sbjct: 261 YFNYQNQFHNNLIVFAFAVHGIA---STLIMVFVHRPYRDFVYSPFRRLFESGPTVYVIP 317
Query: 245 AFS 253
A S
Sbjct: 318 AVS 320
>Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical
protein F15G9.4b protein.
Length = 5198
Score = 27.1 bits (57), Expect = 5.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 232 LIAASIFFHATFVCIWIIPPLDIK 303
+I +F+H T +W IP L +K
Sbjct: 469 IIGGPLFYHNTDTSVWTIPELSLK 492
>Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical
protein F15G9.4a protein.
Length = 5175
Score = 27.1 bits (57), Expect = 5.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 232 LIAASIFFHATFVCIWIIPPLDIK 303
+I +F+H T +W IP L +K
Sbjct: 469 IIGGPLFYHNTDTSVWTIPELSLK 492
>Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical
protein F15G9.4b protein.
Length = 5198
Score = 27.1 bits (57), Expect = 5.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 232 LIAASIFFHATFVCIWIIPPLDIK 303
+I +F+H T +W IP L +K
Sbjct: 469 IIGGPLFYHNTDTSVWTIPELSLK 492
>Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical
protein F15G9.4a protein.
Length = 5175
Score = 27.1 bits (57), Expect = 5.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 232 LIAASIFFHATFVCIWIIPPLDIK 303
+I +F+H T +W IP L +K
Sbjct: 469 IIGGPLFYHNTDTSVWTIPELSLK 492
>AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin
precursor protein.
Length = 5198
Score = 27.1 bits (57), Expect = 5.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 232 LIAASIFFHATFVCIWIIPPLDIK 303
+I +F+H T +W IP L +K
Sbjct: 469 IIGGPLFYHNTDTSVWTIPELSLK 492
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,977,266
Number of Sequences: 27780
Number of extensions: 174954
Number of successful extensions: 409
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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