Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_D07
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    28   0.81 
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    25   5.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   5.7  
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    25   10.0 
SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr 3...    25   10.0 

>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 28.3 bits (60), Expect = 0.81
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 130 VWQGEMEVLWLEPHI 86
           +WQG M  LWLEP+I
Sbjct: 100 LWQGGMNHLWLEPYI 114


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = +1

Query: 469 ETAQELTTREIGPVGEEKTSTLKPPM 546
           ETAQ LT REI P    K    K PM
Sbjct: 139 ETAQSLTFREIAPGNVSKHMFDKNPM 164


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 115 MEVLWLEPHIWLEQPTPRPALSVD 44
           + V + EPH +LE P P P  S +
Sbjct: 850 LNVDFYEPHSYLESPAPEPQPSYE 873


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 364 TRWPTAVNQLLSKVDQEIARI 426
           T +P  V+ L  K+D+E+AR+
Sbjct: 378 TSYPLGVHMLPKKLDEEVARL 398


>SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 208

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +3

Query: 240 SVLATASSKYQYVIDCDPVRGHSSHVSND*RQAVPSAHRPRNTLADSCQPTPQ 398
           S  A A+ ++Q V +   V   +S  +   R++  S+ +PR +      P PQ
Sbjct: 39  SARARATEQFQLVNEAYYVLSDNSRRAQYDRESASSSAKPRQSFFSRTNPQPQ 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.125    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,143,893
Number of Sequences: 5004
Number of extensions: 41999
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)