Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_D07
(559 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0205 - 10012256-10012588,10012676-10012826,10012909-100131... 32 0.36
01_05_0653 - 23948911-23948937,23949031-23949141,23949361-239494... 32 0.36
09_02_0158 - 5102148-5103818 31 0.62
11_04_0422 + 17494795-17494797,17494927-17495421,17496214-17497104 29 2.5
08_02_1172 + 24898290-24899141,24900864-24901328 29 3.3
12_01_0620 + 5109756-5109758,5110016-5110255,5110264-5110653,511... 28 4.4
12_01_0454 + 3580332-3581714 28 4.4
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300... 27 7.7
02_05_0849 + 32202610-32202880,32204234-32205711,32205993-322061... 27 7.7
>05_03_0205 -
10012256-10012588,10012676-10012826,10012909-10013140,
10013310-10013520,10013649-10013767,10013851-10014009,
10014082-10014283,10014368-10014738,10014827-10014891,
10014981-10015025,10015096-10015161,10015257-10015322,
10015591-10015665,10015743-10015814,10016264-10016335,
10016595-10016666,10017554-10017625,10017706-10017777,
10023644-10023830,10024597-10024852
Length = 965
Score = 31.9 bits (69), Expect = 0.36
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 383 STNSSVKSIRRSQEYP-PSNPINLLELRRLKRHR 481
++ +V +RR ++ P P P+ LLELRRL R R
Sbjct: 3 TSRQAVPRVRRRRQDPVPQRPVRLLELRRLLRRR 36
>01_05_0653 -
23948911-23948937,23949031-23949141,23949361-23949441,
23949865-23949984,23950088-23950252,23950344-23950493,
23950565-23950674,23951401-23951518,23951597-23951827,
23952345-23952524,23953639-23953908,23954930-23954979,
23955213-23955288,23955396-23955483,23956010-23956101,
23956200-23956529,23957484-23957593,23957810-23957907,
23959538-23959566
Length = 811
Score = 31.9 bits (69), Expect = 0.36
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +1
Query: 313 MSVMTDARLS--PAHIVPATRWPTAVNQLLSKVDQEIARISTIQSHQPAGTSETETAQEL 486
M++ D +++ HI+P P + +K+D IA+I+ +Q Q G S+ + Q+
Sbjct: 344 MAIHLDGQINNNSGHIIPNIGSPDQIGGSRNKIDMLIAKIAHLQQLQQQGHSQQQQLQQS 403
Query: 487 T 489
T
Sbjct: 404 T 404
>09_02_0158 - 5102148-5103818
Length = 556
Score = 31.1 bits (67), Expect = 0.62
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 411 LIDFTEELVDSCRPTCCGDDV 349
++DF +LVD CR TC DD+
Sbjct: 467 IVDFFRQLVDECRNTCMPDDL 487
>11_04_0422 + 17494795-17494797,17494927-17495421,17496214-17497104
Length = 462
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 322 MTDARLSPAHIVPATRWPTAVNQLLSKVDQEIARI-STIQSHQPAGTS 462
+T R P + PA PT LS +DQ IA I T+ ++P S
Sbjct: 26 LTVKRGEPELVAPAEATPTGEKYYLSNLDQNIAVIVQTVYCYKPPAAS 73
>08_02_1172 + 24898290-24899141,24900864-24901328
Length = 438
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 381 SCRPTCCGDDVRWGQP 334
+C PTCCGDD G P
Sbjct: 158 NCIPTCCGDDNDGGDP 173
>12_01_0620 +
5109756-5109758,5110016-5110255,5110264-5110653,
5110723-5110995
Length = 301
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 3 NTSANRFCSGASVQSTESAGRGVGCSSQMWGSNQSTSISPCQTIAEPP 146
+T+A+R + A+ S S +G S + STS S CQT P
Sbjct: 160 STTASRHTTNAANASNNSVPSSIGQSRKRKAVELSTSTSACQTWRRSP 207
>12_01_0454 + 3580332-3581714
Length = 460
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +1
Query: 310 RMSVMTDARLSPAHIVPATRWPTAVNQLLSKVDQEIARISTIQSHQPA 453
R SVM D + H RW + S+ D+ A ++ Q H PA
Sbjct: 323 RFSVMADLKTHEKHC-GRDRWLCSCGTSFSRKDKLFAHVALFQGHAPA 369
>11_06_0768 +
27129007-27129038,27129140-27129220,27129723-27130089,
27130165-27130255,27130515-27130595,27130764-27131830,
27132060-27132071,27132465-27133209,27133210-27135244,
27135712-27135787,27135925-27136029,27137080-27137166
Length = 1592
Score = 27.5 bits (58), Expect = 7.7
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 1/96 (1%)
Frame = +1
Query: 250 RPPQANISMSLTV-IQYADTVRMSVMTDARLSPAHIVPATRWPTAVNQLLSKVDQEIARI 426
RP S + T+ + D + + S +H++P PTA N+L S V IAR
Sbjct: 78 RPSSRGSSTTSTIGSDFLDIPSLRGPKSSHSSVSHVLPPNHLPTAANRLQSTV--TIARS 135
Query: 427 STIQSHQPAGTSETETAQELTTREIGPVGEEKTSTL 534
S + T + R+ G EK TL
Sbjct: 136 SRPSRFPDSFTQILKAPLRTNNRKRGLKMPEKGFTL 171
>02_05_0849 +
32202610-32202880,32204234-32205711,32205993-32206143,
32206378-32206559
Length = 693
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +1
Query: 436 QSHQPAGTSETETAQELTTREIGPVGEEKTSTLKPPM 546
++HQPAGTS+T T+ +++ G+ +++ + P+
Sbjct: 633 KAHQPAGTSDTNTSAFVSSLSTCDDGDWRSTVTRWPL 669
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.125 0.359
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,694,882
Number of Sequences: 37544
Number of extensions: 334324
Number of successful extensions: 730
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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