Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_D07
         (559 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338951-1|AAQ16198.1|  960|Homo sapiens testis-specific BRDT pr...    30   4.8  
AF019085-1|AAB87862.1|  947|Homo sapiens BRDT protein.                 30   4.8  

>AY338951-1|AAQ16198.1|  960|Homo sapiens testis-specific BRDT
           protein protein.
          Length = 960

 Score = 30.3 bits (65), Expect = 4.8
 Identities = 22/86 (25%), Positives = 39/86 (45%)
 Frame = +1

Query: 301 DTVRMSVMTDARLSPAHIVPATRWPTAVNQLLSKVDQEIARISTIQSHQPAGTSETETAQ 480
           DT   +     + +P+H++P      A N    +  Q +  IS +Q   P+G SE + + 
Sbjct: 725 DTTSANTTLVHQTTPSHVMPPNHHQLAFNYQELEHLQTVKNISPLQILPPSGDSE-QLSN 783

Query: 481 ELTTREIGPVGEEKTSTLKPPMQMAV 558
            +T   + P G+  T+ L+   Q  V
Sbjct: 784 GITV--MHPSGDSDTTMLESECQAPV 807


>AF019085-1|AAB87862.1|  947|Homo sapiens BRDT protein.
          Length = 947

 Score = 30.3 bits (65), Expect = 4.8
 Identities = 22/86 (25%), Positives = 39/86 (45%)
 Frame = +1

Query: 301 DTVRMSVMTDARLSPAHIVPATRWPTAVNQLLSKVDQEIARISTIQSHQPAGTSETETAQ 480
           DT   +     + +P+H++P      A N    +  Q +  IS +Q   P+G SE + + 
Sbjct: 712 DTTSANTTLVHQTTPSHVMPPNHHQLAFNYQELEHLQTVKNISPLQILPPSGDSE-QLSN 770

Query: 481 ELTTREIGPVGEEKTSTLKPPMQMAV 558
            +T   + P G+  T+ L+   Q  V
Sbjct: 771 GITV--MHPSGDSDTTMLESECQAPV 794


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.313    0.125    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,289,620
Number of Sequences: 237096
Number of extensions: 1753524
Number of successful extensions: 3569
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3569
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5590411794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)