Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_D07
         (559 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   2.1  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   3.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   3.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.4  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 332 PGCPQRTSSPQHVGRQLSTNSSVKSIRRSQE 424
           P   Q  SSP+ V R+  +NSS  S+   +E
Sbjct: 353 PELGQSQSSPKFVARREESNSSSPSLDLGKE 383


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 353 SSPQHVGRQLSTNSSVKSIRRSQEYP 430
           SSPQH G   ST+ + ++   S  YP
Sbjct: 67  SSPQHSGSSASTSPAART--TSSMYP 90


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -1

Query: 127 WQGEMEVLWLEPHIWLEQPTPRPAL 53
           W    E L   P  WL  P P P+L
Sbjct: 23  WNVPAEELIHIPEHWLVYPEPNPSL 47


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/33 (30%), Positives = 13/33 (39%)
 Frame = +3

Query: 351 HRPRNTLADSCQPTPQ*SRSGDRKNIHHPIPST 449
           HR     + SC P P        + +H P  ST
Sbjct: 69  HRLYPAFSSSCDPVPGNLEQIGSRPLHPPASST 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.125    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,965
Number of Sequences: 438
Number of extensions: 2928
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)