Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_D06
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo...    78   9e-16
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    26   3.0  
SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces pombe...    26   3.0  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    26   4.0  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   5.3  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    25   5.3  
SPAC22E12.03c |||THIJ/PFPI family peptidase |Schizosaccharomyces...    25   9.3  

>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
           Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 77.8 bits (183), Expect = 9e-16
 Identities = 35/100 (35%), Positives = 60/100 (60%)
 Frame = +3

Query: 231 DEENIRAKEQGILNXXXXXXXXXXXXXXXXXXXXTRPFLSLISKAKAAKLVRSLVDFFLD 410
           DE+    +EQ + N                    +RP ++  SKAK+AK+VR+L+D F  
Sbjct: 37  DEKVANEQEQALTNLSDLYVRENRHNDLAQLVQQSRPLMANFSKAKSAKIVRTLIDKFSG 96

Query: 411 XEAGIGIEVQLCKECIEWAKEERRTFLRQSLEARLIALYF 530
            +  + +++++  +CI+WA +E+RTFLRQ+LE +LI+LY+
Sbjct: 97  EKKSLPLQIEVANDCIKWAIKEKRTFLRQALETKLISLYY 136


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 162 SSNRDEDVRMTDKMVSTGDIPEDDEENIRAKEQGILN 272
           S + D + R  D     GD+   +EE+I+  E  +LN
Sbjct: 404 SPHNDAETRADDDAYLMGDLFNQEEEDIQDTENDLLN 440


>SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 305

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 120 MAGAMLFERSRVSSSSNRDEDVRMTDKMVSTGDIPEDDEENI 245
           +AG+ L    R +S+S++D D           D+PED++E++
Sbjct: 24  LAGSRL-SNCRYTSTSSKDTDTSSHMTHFGFKDVPEDEKEHL 64


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 214  PVLTILSVMRTSSSLFDDDDTRDL 143
            P LTI +++ T S    DD+ R++
Sbjct: 1049 PALTITAILSTKSPFLGDDEAREI 1072


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 369 AAKLVRSLVDFFLDXEAGIGIEVQLCK 449
           A K VRS+V + +D  AG+ +   +CK
Sbjct: 355 AIKNVRSMVIWLVDTPAGLKLNNDICK 381


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 147 SRVSSSSNRDEDVRMTDKMVSTGDIPEDDEEN 242
           S+V +S N+DE+ +  D + S     +++EEN
Sbjct: 74  SQVQNSPNKDEEHQTADLLASNEGNEKNNEEN 105


>SPAC22E12.03c |||THIJ/PFPI family peptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 191

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 193 PTKWLALVTFQKMTKKT*GLKSK 261
           P KW+ ++    +T KT GL +K
Sbjct: 103 PNKWIGMICAGTLTAKTSGLPNK 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,864,975
Number of Sequences: 5004
Number of extensions: 32071
Number of successful extensions: 95
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)