Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_D06
         (532 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0012 + 22145111-22146388                                         80   1e-15
03_05_0106 + 20880069-20881001                                         37   0.009
07_03_1281 - 25439634-25439750,25439868-25440071,25440328-254404...    29   1.8  
12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,709...    29   3.1  
04_04_0516 + 25833801-25834046,25834412-25834532,25834636-258348...    27   7.1  

>04_04_0012 + 22145111-22146388
          Length = 425

 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 40/101 (39%), Positives = 51/101 (50%)
 Frame = +3

Query: 222 PEDDEENIRAKEQGILNXXXXXXXXXXXXXXXXXXXXTRPFLSLISKAKAAKLVRSLVDF 401
           P    E +R KE  I N                     RPF SLI KAK AK+VR ++D 
Sbjct: 39  PSSSAEALRTKELAITNLTNYLTKENRAEELRNLLTQLRPFFSLIPKAKTAKIVRGIIDA 98

Query: 402 FLDXEAGIGIEVQLCKECIEWAKEERRTFLRQSLEARLIAL 524
                    +++ LCKE +EW + E+RTFLRQ +EARL AL
Sbjct: 99  VAKIPGTSELQISLCKEMVEWTRAEKRTFLRQRVEARLAAL 139


>03_05_0106 + 20880069-20881001
          Length = 310

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 15/23 (65%), Positives = 19/23 (82%)
 Frame = +3

Query: 456 IEWAKEERRTFLRQSLEARLIAL 524
           +EW + E+RTFLRQ +EARL AL
Sbjct: 2   VEWTRAEKRTFLRQRVEARLAAL 24


>07_03_1281 -
           25439634-25439750,25439868-25440071,25440328-25440402,
           25440477-25440631,25440704-25440824,25440946-25441020,
           25441216-25441353,25441617-25441727,25441883-25441987,
           25442061-25442139,25442488-25442549,25442634-25442699,
           25442812-25442907,25443353-25443403,25443629-25443709
          Length = 511

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +3

Query: 387 SLVDFFLDXEAGIGIEVQLCKECIEWAKEE 476
           SLV +FLD E G G+EV   K+ +E A+ +
Sbjct: 216 SLVPYFLDEETGWGLEVDELKKQLEEAQSK 245


>12_01_0777 -
           7095081-7096259,7096636-7096725,7096827-7096902,
           7097150-7097367,7097502-7097717,7097922-7098107,
           7098181-7098303,7098399-7098514,7099254-7099832,
           7101485-7101517,7102485-7103679,7103732-7103797,
           7104843-7104905,7105328-7105411
          Length = 1407

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 147 SRVSSSSNRDEDVRMTDKMVSTGDIPEDDEENIRAKEQGI 266
           S  + S  R ED+   D  VS+ D+ E+D + ++ KEQ +
Sbjct: 221 SFTAHSDTRSEDLDGVDIWVSSLDLDEEDSDLLQEKEQDL 260


>04_04_0516 +
           25833801-25834046,25834412-25834532,25834636-25834821,
           25834918-25834944,25836203-25836351,25836553-25836602,
           25837181-25837289,25837395-25837532,25838184-25838463,
           25838533-25838656,25838994-25839003
          Length = 479

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 260 LLFSPYVFFVIFWNVTSANHFVGHA 186
           LLF  Y+ FV  W    ANH VGH+
Sbjct: 401 LLFGSYLRFVYRWGSLDANH-VGHS 424


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,526,836
Number of Sequences: 37544
Number of extensions: 192166
Number of successful extensions: 479
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)