Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_D06
         (532 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13876-16|AAW88394.1|  420|Caenorhabditis elegans Proteasome reg...    85   3e-17
U13876-15|AAA21173.2|  438|Caenorhabditis elegans Proteasome reg...    85   3e-17
Z11505-3|CAA77584.2|  468|Caenorhabditis elegans Hypothetical pr...    58   4e-09
AC006680-2|AAK72302.1|  309|Caenorhabditis elegans Serpentine re...    28   4.8  
Z83122-1|CAB05597.1|  293|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical ...    27   8.4  

>U13876-16|AAW88394.1|  420|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 6, isoform b
           protein.
          Length = 420

 Score = 85.0 bits (201), Expect = 3e-17
 Identities = 51/137 (37%), Positives = 69/137 (50%), Gaps = 1/137 (0%)
 Frame = +3

Query: 120 MAGAMLFERSRVSSSSNRDEDVRMTDKMVSTGDIPEDDEENIRAKEQGILNXXXXXXXXX 299
           M+G  + +        N    +R    +V +   P   +++I+ KE  I+          
Sbjct: 1   MSGGTIMDTMTSLPHQNDQNVIRHLTNLVKS---PASGDDDIKKKEDSIMELGNILAQNK 57

Query: 300 XXXXXXXXXXXTRPFLSLISKAKAAKLVRSLVDFFLDXEAGIG-IEVQLCKECIEWAKEE 476
                      TRPFL  + KAKAAKLVR LVD  L  +   G I+V L KECI+WA E+
Sbjct: 58  QTEELRNMIEQTRPFLVSLGKAKAAKLVRDLVDLCLKIDDQDGDIKVGLVKECIQWATEQ 117

Query: 477 RRTFLRQSLEARLIALY 527
            RTFLRQ+L ARL+ LY
Sbjct: 118 NRTFLRQTLTARLVRLY 134


>U13876-15|AAA21173.2|  438|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 6, isoform a
           protein.
          Length = 438

 Score = 85.0 bits (201), Expect = 3e-17
 Identities = 51/137 (37%), Positives = 69/137 (50%), Gaps = 1/137 (0%)
 Frame = +3

Query: 120 MAGAMLFERSRVSSSSNRDEDVRMTDKMVSTGDIPEDDEENIRAKEQGILNXXXXXXXXX 299
           M+G  + +        N    +R    +V +   P   +++I+ KE  I+          
Sbjct: 19  MSGGTIMDTMTSLPHQNDQNVIRHLTNLVKS---PASGDDDIKKKEDSIMELGNILAQNK 75

Query: 300 XXXXXXXXXXXTRPFLSLISKAKAAKLVRSLVDFFLDXEAGIG-IEVQLCKECIEWAKEE 476
                      TRPFL  + KAKAAKLVR LVD  L  +   G I+V L KECI+WA E+
Sbjct: 76  QTEELRNMIEQTRPFLVSLGKAKAAKLVRDLVDLCLKIDDQDGDIKVGLVKECIQWATEQ 135

Query: 477 RRTFLRQSLEARLIALY 527
            RTFLRQ+L ARL+ LY
Sbjct: 136 NRTFLRQTLTARLVRLY 152


>Z11505-3|CAA77584.2|  468|Caenorhabditis elegans Hypothetical
           protein F59B2.5 protein.
          Length = 468

 Score = 58.0 bits (134), Expect = 4e-09
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 8/72 (11%)
 Frame = +3

Query: 336 RPFLSLISKAKAAKLVRSLVDFFLDXEAGIGI--------EVQLCKECIEWAKEERRTFL 491
           R F  L+ KA+A+KL+R +V+  L  + G+G         ++ L   CI WA   +R FL
Sbjct: 110 RSFYDLVGKARASKLIRDIVEHALTIDQGVGPALDHGKKEKIDLLTNCIGWATSNKREFL 169

Query: 492 RQSLEARLIALY 527
           R+SL+ARLI LY
Sbjct: 170 RRSLQARLIRLY 181


>AC006680-2|AAK72302.1|  309|Caenorhabditis elegans Serpentine
           receptor, class x protein9 protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 129 LQPCCVYLYDYTISVLD 79
           L PCCV++ DYT+  L+
Sbjct: 146 LFPCCVFVIDYTVMALE 162


>Z83122-1|CAB05597.1|  293|Caenorhabditis elegans Hypothetical
           protein R11A5.2 protein.
          Length = 293

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 177 EDVRMTDKMVSTGDIPEDDEENIRAKEQGI 266
           EDVRM + +    ++  DD +NI+ K Q +
Sbjct: 214 EDVRMEETIAKIDEVRIDDNKNIQEKSQRV 243


>AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical
           protein F09G2.9 protein.
          Length = 415

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 141 ERSRVSSSSNRDEDVRMTDKMVSTGDIPEDDEENIRAKEQ 260
           E +  SS   +DE V  T++     + P  DEE+  A+E+
Sbjct: 171 EEAPASSEEKKDEPVVNTEEKKDAAEAPAADEESEAAEEK 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,362,342
Number of Sequences: 27780
Number of extensions: 182013
Number of successful extensions: 536
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)