Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_D05
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    30   0.21 
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    25   6.1  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   6.1  
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    25   6.1  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    25   8.1  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    25   8.1  

>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 21/67 (31%), Positives = 35/67 (52%)
 Frame = +3

Query: 165 EAFNAIVYSMFTNKNLDLTSQSLISPKGSSIWTMEELDEAIKDPSTNPNYLPAITESYRS 344
           E  N+ +Y  F  +  D+ S    +   ++   +EEL E I   S  P+YL +I+ S +S
Sbjct: 518 EFVNSEIYYRFLAQ--DVVSDHKSTNSSATFSRLEELGENIPAISKQPSYL-SISSSSKS 574

Query: 345 LKSTP*P 365
           + S+P P
Sbjct: 575 INSSPSP 581


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = +3

Query: 126 DKNFDPELKPYLEEAFNAI----VYSMFTNKNLDLTSQSLISPKGSSIWT 263
           D  F+ E KP +    +++    V S+ TN+  D  S    S  GS+ WT
Sbjct: 723 DMMFEEEQKPIVPIDLSSMQDDQVSSLTTNEEFDPLSSFQASHSGSNFWT 772


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +3

Query: 105 ELEKVLHDKNFDPELKPYLEEAFNAI 182
           E   +   K   PELKP L EAF  I
Sbjct: 531 ERSSISPSKPLSPELKPLLNEAFQDI 556


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 466 TNPELIHYLETARTXLTSESEFQNKETISIVTK 564
           T+P+ I  L    T LT+E E  N + ++ VTK
Sbjct: 55  TDPDAIVELSKKCTLLTTEIEHINTDALAAVTK 87


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 16/74 (21%), Positives = 34/74 (45%)
 Frame = +3

Query: 90  TWTYDELEKVLHDKNFDPELKPYLEEAFNAIVYSMFTNKNLDLTSQSLISPKGSSIWTME 269
           T  +D+ + + H  + + ++   +EE FN++  S +      L + + +S +  S  T  
Sbjct: 519 TMNFDDDQTLPHSVS-ESDIVDIIEEVFNSVEASRYIIVQYGLFALTKLSARLGSSSTAS 577

Query: 270 ELDEAIKDPSTNPN 311
            +D+ I     N N
Sbjct: 578 RIDKIIYSYKRNKN 591


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 102 DELEKVLHDKNFDPELKPYLE 164
           D L++V HD   D ELK +LE
Sbjct: 303 DTLKQVQHDAENDEELKDWLE 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,182,445
Number of Sequences: 5004
Number of extensions: 40448
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)