Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_D05
         (582 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56964-5|AAB54032.1|  454|Caenorhabditis elegans Warthog (hedgeh...    29   3.2  
Z66567-1|CAA91491.1|  887|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z37092-3|CAA85454.1|  266|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AC025722-7|AAK68510.1|  540|Caenorhabditis elegans Hypothetical ...    27   9.7  

>U56964-5|AAB54032.1|  454|Caenorhabditis elegans Warthog
           (hedgehog-like family)protein 2 protein.
          Length = 454

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
 Frame = +3

Query: 276 DEAIKDPSTNPNYLPAI---TESYRS 344
           D+ IK PS NPN++P +   T+ Y+S
Sbjct: 77  DQFIKSPSKNPNFVPQLAICTDEYKS 102


>Z66567-1|CAA91491.1|  887|Caenorhabditis elegans Hypothetical
           protein ZK455.1 protein.
          Length = 887

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
 Frame = +3

Query: 126 DKNFDPELKP-----YLEEAFNAIVYSMFTNKNLDLTSQSLISPKGSSI 257
           ++NF+  + P     YL     A++YS+  N N+D+     ++P G  I
Sbjct: 534 NRNFEGRIHPHVRANYLASPPLAVLYSIIGNVNVDINGVLAVTPDGKEI 582


>Z37092-3|CAA85454.1|  266|Caenorhabditis elegans Hypothetical
           protein F44F4.3 protein.
          Length = 266

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
 Frame = +3

Query: 96  TYDELEKVLHDKNFDPELKPYLEEAFNAIVYSMFTNKNLDLTSQSLISPKG-SSIWTMEE 272
           TY E ++  H + F    +P  +     I   + +    D+T + +   +  SSI  ME 
Sbjct: 31  TYSEDKRAFHSRLFHVFYEPDFKSVAEMIKCQL-SGTVKDVTLEEIQGKRELSSICKMEA 89

Query: 273 LDEAIKDPSTNPNYLPAITESYR 341
               I+D +   NY+  IT   +
Sbjct: 90  YTSKIEDKTKQRNYMATITRQLK 112


>AC025722-7|AAK68510.1|  540|Caenorhabditis elegans Hypothetical
           protein Y50D4C.5 protein.
          Length = 540

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 391 KVYVRAMDISTWTLAELNEAIANPATNP--ELIHYLETARTXLTSESEFQN 537
           K+  RAMDI    +A L+E + NP+ +   E+I   E  R   +   E Q+
Sbjct: 439 KLRTRAMDIDQQRIALLDEKLDNPSVDDVREIIFLREIMRRVWSINRELQD 489


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,909,188
Number of Sequences: 27780
Number of extensions: 221759
Number of successful extensions: 589
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)