Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_D04
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal prote...   193   8e-50
Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z81125-4|CAB03383.3|  594|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U80451-11|AAB37845.2|  206|Caenorhabditis elegans Glutathione s-...    27   8.8  
U23448-3|AAO26017.1|  612|Caenorhabditis elegans Egg laying defe...    27   8.8  
U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defe...    27   8.8  
U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defe...    27   8.8  
AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.     27   8.8  

>U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 14 protein.
          Length = 152

 Score =  193 bits (471), Expect = 8e-50
 Identities = 96/141 (68%), Positives = 107/141 (75%), Gaps = 1/141 (0%)
 Frame = -1

Query: 526 MAP-RKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGG 350
           MAP RK K  +E+  V+LGPQ   GE++FGVAHIFASFNDTFVH+TD+SGRETI RVTGG
Sbjct: 1   MAPARKGKAKEEQAVVSLGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRVTGG 60

Query: 349 MKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXGAQXXXXXX 170
           MKVKADRDE+SPYAAMLAAQDVA++CK LGI ALHIKLRA           GAQ      
Sbjct: 61  MKVKADRDESSPYAAMLAAQDVADRCKQLGINALHIKLRATGGTRTKTPGPGAQSALRAL 120

Query: 169 XXXSMKIGRIEDVTPVPSDST 107
               MKIGRIEDVTP+PSD T
Sbjct: 121 ARAGMKIGRIEDVTPIPSDCT 141


>Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical
           protein F14B6.2 protein.
          Length = 720

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 556 SARGKAKG*AMAPRKNKVAKEEVQVTLGPQHLVGE 452
           S + K KG   + + N+  K + +VT  P+HLVG+
Sbjct: 306 SRKPKGKGLKKSKKLNQKPKSDEEVTKQPRHLVGK 340


>Z81125-4|CAB03383.3|  594|Caenorhabditis elegans Hypothetical
           protein T22A3.6 protein.
          Length = 594

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 176 TESRLGTRSRSLCLVTSSRTELNVQGSYPQGFTFLSNILCSQ 301
           TESRL   + + C++ + R  + V+ SY +   F +  L S+
Sbjct: 487 TESRLFMNTEASCMLLNRRNSVEVKNSYKESPFFTNEKLVSE 528


>U80451-11|AAB37845.2|  206|Caenorhabditis elegans Glutathione
           s-transferase protein 6 protein.
          Length = 206

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +2

Query: 230 RTELNVQGSYPQGFTFLSNILCSQHSG--VG*SLITISL 340
           RT++ V  ++ + F F  NIL S HSG  VG SL  + L
Sbjct: 121 RTDVFVP-AFKKNFEFFENILASNHSGFFVGNSLTWVDL 158


>U23448-3|AAO26017.1|  612|Caenorhabditis elegans Egg laying
           defective protein 27,isoform c protein.
          Length = 612

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 166 EREHGEQTGHQVQESLSCYLQSHGA*CAGQLSP 264
           ERE   Q   Q Q++L    Q H A  A QL+P
Sbjct: 408 ERERERQHQQQAQQALHQQQQQHAAAAANQLNP 440


>U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defective
            protein 27,isoform b protein.
          Length = 1124

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 166  EREHGEQTGHQVQESLSCYLQSHGA*CAGQLSP 264
            ERE   Q   Q Q++L    Q H A  A QL+P
Sbjct: 920  ERERERQHQQQAQQALHQQQQQHAAAAANQLNP 952


>U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defective
            protein 27,isoform a protein.
          Length = 1129

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 166  EREHGEQTGHQVQESLSCYLQSHGA*CAGQLSP 264
            ERE   Q   Q Q++L    Q H A  A QL+P
Sbjct: 925  ERERERQHQQQAQQALHQQQQQHAAAAANQLNP 957


>AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.
          Length = 1129

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 166  EREHGEQTGHQVQESLSCYLQSHGA*CAGQLSP 264
            ERE   Q   Q Q++L    Q H A  A QL+P
Sbjct: 925  ERERERQHQQQAQQALHQQQQQHAAAAANQLNP 957


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,346,021
Number of Sequences: 27780
Number of extensions: 337235
Number of successful extensions: 963
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)