Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_D03
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0370 + 18139557-18140469,18140561-18140704,18140804-181409...    31   1.2  
06_03_0444 + 20864183-20864436,20864831-20865818                       29   3.7  
06_03_0275 - 19079782-19081262,19081803-19082029,19085080-19085099     28   6.5  
05_03_0033 - 7585267-7586028                                           28   6.5  
04_04_0889 - 29105506-29106502,29106909-29107069,29107259-291073...    28   6.5  
03_01_0031 + 292335-292844                                             28   6.5  
07_03_0632 - 20112297-20116562                                         28   8.6  

>12_02_0370 +
           18139557-18140469,18140561-18140704,18140804-18140956,
           18141032-18141147,18141231-18141398,18142110-18142334,
           18142458-18142577
          Length = 612

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 221 EPQPEERPAVRSSAAPPKVDDSKDFPSLS*TCSEP 117
           +PQPE +PA  S   PP+   S   P+ S T  +P
Sbjct: 74  QPQPEPQPAAPSQPPPPQEQPSPPPPASSNTTQQP 108


>06_03_0444 + 20864183-20864436,20864831-20865818
          Length = 413

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 557 WVLGVRVPVADRL-QHQLPELSLQWFRLQSLS 649
           W L V  PV   + Q QLP  S +W  LQSLS
Sbjct: 350 WPLTVFFPVEMYIRQRQLPRFSAKWVALQSLS 381


>06_03_0275 - 19079782-19081262,19081803-19082029,19085080-19085099
          Length = 575

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 318 GNRVHVQRSSTSWRNRRAWQRPWARTRSGNA*RAPAGGTSCS 193
           GNR   + S   WR+  + +R  ARTR G   +A  G    S
Sbjct: 47  GNRRRAEESDEEWRDTASNERRAARTRHGARGQAKRGSNIVS 88


>05_03_0033 - 7585267-7586028
          Length = 253

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 221 EPQPEERPAVRSSAAPPKVDDSKDFP 144
           EPQPE +P  +  +AP K   S  +P
Sbjct: 228 EPQPESKPEPKPESAPKKETPSSAYP 253


>04_04_0889 -
           29105506-29106502,29106909-29107069,29107259-29107390,
           29107484-29107645
          Length = 483

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 510 ESFILIQGEFPWFFLSGCWAFGFRLLTVSSTSFRSF 617
           E+F++    +P F    CW  G +LL +   SF  F
Sbjct: 141 EAFLVPTPYYPAFDRDCCWRSGIKLLPIECHSFNDF 176


>03_01_0031 + 292335-292844
          Length = 169

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = -3

Query: 345 TCGSSEACVGNRVHVQRSST--SWRNRRAWQRPWARTR 238
           T G   A VG R   +R S    WR RR W+R W   R
Sbjct: 19  TAGVETAMVGARGCGRRWSEWRRWRRRRGWRRRWGWQR 56


>07_03_0632 - 20112297-20116562
          Length = 1421

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 54  NNGRYNI*FVTLSYFEKGEDRRLTASLAER 143
           + G+YN+    LS F++G+ + L ASL E+
Sbjct: 868 SRGKYNLYGKELSQFDRGQKQPLQASLVEK 897


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,143,574
Number of Sequences: 37544
Number of extensions: 292809
Number of successful extensions: 907
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)