Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_D02
(459 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657 32 0.19
12_01_0971 - 9781887-9781924,9782036-9782247,9782327-9784114,978... 30 1.0
12_01_0347 + 2658545-2659309 29 1.8
08_01_1013 + 10251463-10251858,10252366-10252434,10252545-102526... 29 1.8
04_03_1031 + 21850857-21851009,21852229-21852350,21852447-218528... 28 4.2
12_01_0584 - 4762476-4762613,4763986-4764075,4765048-4765146,476... 27 5.5
05_04_0187 - 18878500-18879224,18879971-18880043 27 7.3
05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650... 27 7.3
05_01_0234 - 1743784-1744017,1748103-1749068 27 7.3
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424... 27 7.3
04_01_0596 - 7852529-7855185,7855545-7855581 27 7.3
>10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657
Length = 1032
Score = 32.3 bits (70), Expect = 0.19
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +2
Query: 113 SFQRSTPQDSHYVAAVVEYQVSRG--NVEQNRLNYISHIEEAAKQNADIVVFPELTLTNG 286
+F +TP HY A Y + G N+E+ N + H + N D TLT
Sbjct: 225 AFSFTTP--GHYSATEFYYNNADGEQNIEEFYYNAVGHEQNIVSPNMD-------TLTAN 275
Query: 287 TTSFAVPIH 313
T SFA PIH
Sbjct: 276 TFSFATPIH 284
>12_01_0971 -
9781887-9781924,9782036-9782247,9782327-9784114,
9784630-9785432
Length = 946
Score = 29.9 bits (64), Expect = 1.0
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +2
Query: 92 FSCYLQISFQRSTPQDSHYVAAVVEYQVSRGNVEQNRLNYISHIEEAAKQNADIVVFPEL 271
F C +S R TP + +++ S G+V ++ N ISH+ K ++VF ++
Sbjct: 218 FKCITFVSISR-TPNIRKILVDMLKGLGSNGDVSEDEQNLISHLRGFLKDKRYLIVFDDI 276
>12_01_0347 + 2658545-2659309
Length = 254
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = -2
Query: 173 LDTRPLQLHSGCLAE--SIFEMRSASNRKNILDIVEDTS 63
L+TRP + GC S+F RS S RKN+++ V+D S
Sbjct: 150 LETRPRGVGGGCCPGLGSLFVRRSRS-RKNVVECVDDQS 187
>08_01_1013 +
10251463-10251858,10252366-10252434,10252545-10252652,
10253261-10253326,10254258-10254395,10255047-10255094,
10256292-10256398,10257228-10257302,10258317-10258368,
10258485-10259068,10259944-10260150,10260236-10260407
Length = 673
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = +2
Query: 260 FPELTLTNGTTSFAVPIHGLLQRYPIPALHPELYDNLLVSMSAAARDNQIYVVINTRELM 439
FP + L AVP+HG+ P P N+L+ + RD + +E++
Sbjct: 586 FPLVDLQKSLNQVAVPVHGVYVAKPAKPNSPR---NILIKL---FRDKDPDSKLTKQEIL 639
Query: 440 DCTRN 454
DC N
Sbjct: 640 DCAAN 644
>04_03_1031 +
21850857-21851009,21852229-21852350,21852447-21852891,
21852981-21853087,21853192-21854524,21854632-21854859,
21854951-21855181,21855278-21855537,21855651-21856113
Length = 1113
Score = 27.9 bits (59), Expect = 4.2
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 374 PANYHIVLDGELVSDTVAADRGLVRRNWSSHL-LMSIQERQRCQHFVLQLLRCG 216
PAN + L + V+A + +V + WSSHL + QH V+ +LR G
Sbjct: 834 PANASVSLP--ITKQWVSATKSIVEQEWSSHLESLQALPADHAQH-VVPVLRAG 884
>12_01_0584 -
4762476-4762613,4763986-4764075,4765048-4765146,
4766032-4766154,4766243-4766405,4767307-4767356,
4767826-4767942,4769477-4769683,4769763-4769900,
4771212-4771274,4771358-4771441,4771933-4772084,
4772219-4772357,4772814-4772924
Length = 557
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = -2
Query: 368 NYHIVLDGELVSDTVAADRGLVRRNWSSHLLMSIQER 258
+++ ++DGE++ DTV D GL RR + ++ LMSI +
Sbjct: 411 HHYTLIDGEMIVDTV-PDLGLKRR-YLAYDLMSINSQ 445
>05_04_0187 - 18878500-18879224,18879971-18880043
Length = 265
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 236 KQNADIVVFPELTLTNGTTSFAVPIHGLLQRYPIPALHPELYD-NLLVSMSAAA 394
KQN ++ P + FA + L ++ P+PA+H L + +V++ AA
Sbjct: 88 KQNRVLLNLPHIVTACRRAGFAPHVMNLRRQTPLPAIHAALSSADAMVAVHGAA 141
>05_03_0415 -
13661745-13664240,13664376-13664401,13665018-13665035,
13665914-13666181,13666531-13666598,13667102-13667243
Length = 1005
Score = 27.1 bits (57), Expect = 7.3
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 297 SPYQSTVCCNGIRYQLSIQNYMIICWYRC 383
S + +CCNG + I N ++ + RC
Sbjct: 290 SAFHGLICCNGFESNVFICNALVAMYSRC 318
>05_01_0234 - 1743784-1744017,1748103-1749068
Length = 399
Score = 27.1 bits (57), Expect = 7.3
Identities = 8/31 (25%), Positives = 20/31 (64%)
Frame = -3
Query: 394 RRSRHRYQQIII*FWMESWYRIPLQQTVDWY 302
RR RH+ + + + ++ W+++P +++ D Y
Sbjct: 89 RRKRHKLIVMAMWYMLQDWFQLPTRESDDLY 119
>04_04_1574 -
34536744-34537136,34541247-34541405,34541497-34542411,
34543642-34543731,34544324-34544390,34544483-34544676,
34544770-34545510,34545596-34545661,34545783-34545908,
34545978-34546073,34546153-34546521,34546602-34546724,
34546802-34546906,34547394-34547531,34547665-34547760,
34548018-34548275
Length = 1311
Score = 27.1 bits (57), Expect = 7.3
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +2
Query: 200 RLNYISHIEEAAKQNA--DIVVFPELTL-TNGTTSFAVPIHGLLQRYPIPAL 346
RLN SH+ EA KQ A ++ V + NG+T+ +VP+ L +P L
Sbjct: 506 RLNSTSHLGEAVKQLAPNNLGVHSSMDRPANGSTTTSVPLKRNLVSHPARTL 557
>04_01_0596 - 7852529-7855185,7855545-7855581
Length = 897
Score = 27.1 bits (57), Expect = 7.3
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 297 SPYQSTVCCNGIRYQLSIQNYMIICWYRC 383
S + +CCNG + I N ++ + RC
Sbjct: 182 SAFHGLICCNGFESNVFICNALVAMYSRC 210
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,366,249
Number of Sequences: 37544
Number of extensions: 247309
Number of successful extensions: 614
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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