Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_D01
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    26   4.4  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    25   5.9  
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    25   7.7  
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    25   7.7  

>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 159 LLASQPIDLWLSTAITGPVSPRALVV 82
           LL    I +WLS A+ GPV+   L+V
Sbjct: 344 LLIGCAIPIWLSNALKGPVASVELLV 369


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 94  GLGSDILTLLLFAVNKMIAGIALVKVWHVP 5
           G+  D++T     VNKM    AL+K +H P
Sbjct: 542 GVNKDLITRPFKNVNKMSVRKALIKPFHPP 571


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -2

Query: 454 LYDFPSIVITKPDMNAVSGSNTLKWAS*ARLAGFRTCVTTDVCAY 320
           L   PSI  T PD++AV   N  +  +  +LA  RT V      Y
Sbjct: 123 LDSIPSIAYTVPDLDAVVTINIYESDTNTQLACVRTTVQNGRSVY 167


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 385 SGCYCLKPHSYPV 423
           SGCY LKP SY +
Sbjct: 235 SGCYILKPWSYSI 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,250,552
Number of Sequences: 5004
Number of extensions: 44148
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)