Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_D01
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1343 - 26274788-26275019,26275972-26276611,26277174-262783...    31   0.64 
12_01_0130 + 977181-977828                                             28   6.0  
08_02_0246 + 14745367-14745372,14745452-14746106,14746299-147472...    28   6.0  

>08_02_1343 -
           26274788-26275019,26275972-26276611,26277174-26278367,
           26278515-26278701
          Length = 750

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = +2

Query: 188 RTNHRYRIVGFVD----NTYTGYRPNYRRTYTPNQNDGDECEISDIDEICTHV 334
           R N RYR+VGFV+    + Y G+   Y R   P Q +G        D   T V
Sbjct: 678 RDNSRYRLVGFVEHLGPSMYAGHYVAYVRPSPPQQTNGSSSWFRASDTDITEV 730


>12_01_0130 + 977181-977828
          Length = 215

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 562 NGSNHELLAATWAAPKPCETASW*ICLA 479
           NGSN     +T++AP PC+ A W +C +
Sbjct: 189 NGSN-SFGTSTFSAPAPCQAAPW-VCFS 214


>08_02_0246 + 14745367-14745372,14745452-14746106,14746299-14747269,
            14748123-14749168,14750669-14751473
          Length = 1160

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +2

Query: 197  HRYRIVGFVDNTYTGYRPNYRRTYTPNQNDGDECEISDIDEICTHVCGNACTESC*AS 370
            HR +++  V N    +    ++  TP  N  +E  + +I EIC +      +E   AS
Sbjct: 902  HRVQLLLQVLNVKRFHHQQQQQQQTPQNNGQEELTVPEISEICDYFSRRVASEPYDAS 959


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,702,999
Number of Sequences: 37544
Number of extensions: 292595
Number of successful extensions: 623
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)