Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_C24
         (287 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    29   0.18 
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    24   5.0  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    24   5.0  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    23   6.7  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    23   8.8  
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    23   8.8  
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...    23   8.8  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    23   8.8  
SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p...    23   8.8  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    23   8.8  

>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 28.7 bits (61), Expect = 0.18
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 207 LSFSQ*NSHGFSYVLPSDPQTGL*IFPQIHNGGGRAVT 94
           L++ Q +++G SYVL +DP      F +  NG  R  T
Sbjct: 289 LAYEQADANGISYVLATDPDADRFAFAEKINGAWRRFT 326


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 131 FRKYITAVAELLPSILAQRRSEEYR 57
           F KY  A+  LL ++L Q   +E+R
Sbjct: 531 FEKYFDAIMPLLFNVLQQADGKEFR 555


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 223 DNREKHRMRRGHPLLLY 273
           DNR+   +R G P++LY
Sbjct: 697 DNRQVFMVRNGEPMILY 713


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 15/43 (34%), Positives = 17/43 (39%)
 Frame = +2

Query: 155  SDGKTYENPCEFYCEKDKTHSNMTIVKNTECDVGIPCYCTLEY 283
            SD   Y N  E    KD   SN+  V  T    G P  C L +
Sbjct: 2850 SDPGNYSNNIENPYTKDFEDSNLAYVLYTSGSTGKPKGCCLTH 2892


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 72   SPLR*YTR*QLCHRRYVFAEKSIVP 146
            SP   Y R   CHRR    EK I+P
Sbjct: 1695 SPRFTYYRHTKCHRRNEKNEKEIIP 1719


>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 200 KDKTHSNMTIVKNTECDVGIP 262
           +DK   N T+VK+ E  V IP
Sbjct: 95  EDKEDLNRTVVKSQEAIVSIP 115


>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 131 FRKYITAVAELLPSILAQRRS 69
           FR+ +  V  +LPSILAQR S
Sbjct: 4   FRRSVQCVG-VLPSILAQRSS 23


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 119 ITAVAELLPSILAQRRSEEYRVYSFCV*ILTAQIL 15
           +T   + + SIL++ R EEYR+ +  V  L ++ L
Sbjct: 537 LTEHLKTVESILSKSRHEEYRIANHIVAYLLSRSL 571


>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 314

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 167 SYHLTRRRDYRFFRKYITAVAELLPSI 87
           S+HLT   D+  F  +   + +L+P +
Sbjct: 154 SFHLTSIFDHSIFEAFSRVIQKLIPQL 180


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
 Frame = +2

Query: 122 IC-GKIYSPVCGSDGKTYENPC 184
           IC G +Y PV    G T+  PC
Sbjct: 171 ICFGMLYDPVVSPCGHTFCGPC 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,256,580
Number of Sequences: 5004
Number of extensions: 24111
Number of successful extensions: 66
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)