Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_C24
(287 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0379 + 43177978-43178572,43178643-43178674 34 0.021
03_05_0936 - 28955486-28955683,28956320-28956424,28956550-289566... 29 0.80
12_01_0415 + 3292576-3293727 27 1.8
02_02_0447 + 10363077-10363245,10363419-10363519,10363947-103641... 27 3.2
12_01_0017 - 127617-127775,127920-128000,128284-128395,128486-12... 26 5.6
07_03_1129 + 24184785-24185561 26 5.6
07_03_0189 + 14862848-14862904,14862936-14863071,14864436-148645... 26 5.6
03_02_0511 + 9016215-9016425,9017292-9017365,9018399-9018609,901... 26 5.6
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 25 7.4
01_05_0293 - 20532559-20532572,20532573-20532798,20532926-205339... 25 7.4
11_01_0017 - 129261-129335,129352-129426,129565-129645,129929-13... 25 9.8
09_06_0319 - 22293869-22293906,22294539-22295808 25 9.8
09_04_0353 + 16915618-16916934 25 9.8
01_07_0121 - 41194049-41194558 25 9.8
>01_07_0379 + 43177978-43178572,43178643-43178674
Length = 208
Score = 33.9 bits (74), Expect = 0.021
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 227 LSYCCVSCPFRSKIH-TGSRTSYHLTRRRDYRFFRKYITA 111
L Y C C FR+ T S+T +HL R +YR++ Y+ A
Sbjct: 157 LFYSCACCAFRNTATATSSKTIFHLHPRWEYRWYLLYLCA 196
>03_05_0936 -
28955486-28955683,28956320-28956424,28956550-28956693,
28957078-28957356,28957480-28957587,28958288-28958567,
28958724-28960029,28961301-28962342
Length = 1153
Score = 28.7 bits (61), Expect = 0.80
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 164 YHLTRRRDYRFFRKYITAVAELLPSIL 84
YHL R DY ++R+++ V ELL + L
Sbjct: 864 YHLLRLYDYFYYREHLLIVCELLKANL 890
>12_01_0415 + 3292576-3293727
Length = 383
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 114 GGGRAVTEYISAAAIRRIPSLFILC 40
GGG E +S A IRR+ FILC
Sbjct: 38 GGGGGGEEILSVAWIRRLLEAFILC 62
>02_02_0447 +
10363077-10363245,10363419-10363519,10363947-10364140,
10364223-10364634
Length = 291
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = -1
Query: 116 TAVAELLPSILAQRRS--EEYRVYSFCV 39
++V +L S LA+ R +EYR+Y++CV
Sbjct: 247 SSVCQLSDSELARMRKVQDEYRIYNYCV 274
>12_01_0017 -
127617-127775,127920-128000,128284-128395,128486-129538,
129617-129705,130136-130309,130566-130687,130790-130924,
131132-131494,131561-131728,131850-131889
Length = 831
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/55 (23%), Positives = 23/55 (41%)
Frame = +2
Query: 98 TALPPPLCICGKIYSPVCGSDGKTYENPCEFYCEKDKTHSNMTIVKNTECDVGIP 262
TA+ + G+ VC S+G + + + D H +V++ C IP
Sbjct: 517 TAVDIENSLSGETSGTVCSSEGNNCTSATDSLQKSDSCHQQNMLVQSIHCTDQIP 571
>07_03_1129 + 24184785-24185561
Length = 258
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = -1
Query: 278 PRYSSRGCPRRIRCFSRLSYCCVSCPFRSKIHTGSRTSYHLTR 150
PR S R CF LS SC RS+ S + HL R
Sbjct: 52 PRQGSTTWSSRSTCFLALSIADRSCSNRSRNTAHSSRAQHLER 94
>07_03_0189 +
14862848-14862904,14862936-14863071,14864436-14864593,
14864640-14865533,14865634-14865792,14866342-14866623
Length = 561
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/45 (24%), Positives = 19/45 (42%)
Frame = +2
Query: 137 YSPVCGSDGKTYENPCEFYCEKDKTHSNMTIVKNTECDVGIPCYC 271
+SP GS ++Y PC + K +H + + P +C
Sbjct: 240 FSPYHGSHDRSYNFPCHLFNGKSGSHLQVLQLDTVTLGPSPPGFC 284
>03_02_0511 +
9016215-9016425,9017292-9017365,9018399-9018609,
9019235-9019263,9019646-9020798,9021022-9021251
Length = 635
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 283 IFQGTVAGDAHVAFGVFHDCH 221
IF+GT GD GV DCH
Sbjct: 557 IFKGTKGGDLSEDEGVVKDCH 577
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 25.4 bits (53), Expect = 7.4
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +3
Query: 246 ATWASPATVPW 278
ATW++PAT PW
Sbjct: 1043 ATWSAPATNPW 1053
>01_05_0293 -
20532559-20532572,20532573-20532798,20532926-20533960,
20534670-20534996
Length = 533
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -1
Query: 215 CVSCPFRSKIHTGSRTSYHLTRRRDYRFFRKYI 117
CV CPFR+ I G +L D+ R +
Sbjct: 489 CVQCPFRNSIFRGLGARRYLLDGNDFFALRDLV 521
>11_01_0017 -
129261-129335,129352-129426,129565-129645,129929-130040,
130131-131177,131256-131347,131773-131943,132150-132253,
132367-132501,132583-132724,132803-133059,133126-133337,
133417-133454
Length = 846
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/55 (21%), Positives = 23/55 (41%)
Frame = +2
Query: 98 TALPPPLCICGKIYSPVCGSDGKTYENPCEFYCEKDKTHSNMTIVKNTECDVGIP 262
TA+ + G+ VC S+G + + + D H +V++ C +P
Sbjct: 535 TAVDIENSLSGETSGTVCSSEGNNCTSATDSLRKSDSCHQQNMLVQSVHCTDQMP 589
>09_06_0319 - 22293869-22293906,22294539-22295808
Length = 435
Score = 25.0 bits (52), Expect = 9.8
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +3
Query: 246 ATWASPATVPWN 281
ATW +P T PWN
Sbjct: 298 ATWTAPDTNPWN 309
>09_04_0353 + 16915618-16916934
Length = 438
Score = 25.0 bits (52), Expect = 9.8
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +2
Query: 92 SVTALPPPLCICGKIYSPVCGSDGKTYE 175
S +LP +C +YSP+C + Y+
Sbjct: 134 SYASLPCSSAMCNALYSPLCFQNACVYQ 161
>01_07_0121 - 41194049-41194558
Length = 169
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 170 TSYHLTRRRDYRFFRKYITAVAELLPSILAQRRSEEY 60
+SY ++RR YR +K TA P + Q + + Y
Sbjct: 3 SSYLMSRRFSYRRLKKLPTAAVAAPPDVPQQLQEQYY 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,377,591
Number of Sequences: 37544
Number of extensions: 164460
Number of successful extensions: 439
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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