Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_C24
         (287 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              33   5e-04
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   1.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   1.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   2.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   3.0  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   3.0  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   4.0  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   4.0  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    20   7.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   9.2  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 33.5 bits (73), Expect = 5e-04
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 125 CGKIYSPVCGSDGKTYENPCEFYCEKDKTHSNMTIVKN 238
           C + + PVC S+GK Y N CE +  +   HS  ++ K+
Sbjct: 110 CPRRHRPVCASNGKIYANHCELH--RAACHSGSSLTKS 145


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +2

Query: 125 CGKIYSPVCGSDGKTYENPCEFYCEKDKT 211
           C   Y      DG +Y N  E  C +D++
Sbjct: 230 CHSRYEDSRHEDGNSYRNDGERSCSRDRS 258


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 128 RKYITAVAELLPSILAQRRSEEYRVYSFCV 39
           RK  T    ++ S   Q++SEE  +   CV
Sbjct: 795 RKTATTTQPVISSRKEQKKSEEKNINDHCV 824


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 2.3
 Identities = 13/47 (27%), Positives = 18/47 (38%)
 Frame = +2

Query: 20  FVPLIFKHKMNKLGXXXXXXXXXYSVTALPPPLCICGKIYSPVCGSD 160
           +VP I  H +  +G           V      LC+    Y+PVC  D
Sbjct: 116 WVPDIVMHSVTSVGIDLEMPSVECIVFNSGTILCVPFTTYTPVCEYD 162


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -3

Query: 114 GGGRAVTEYISAAAIRRIPSLFILCLNINGTNLEF 10
           G G  V  ++S  ++R   +LF++ L I+   + F
Sbjct: 69  GNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMF 103


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 111 RRYVFAEKSIVPSAGQM 161
           RR +FA + ++ SAG +
Sbjct: 308 RRIIFARREVILSAGSV 324


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 114 GGGRAVTEYISAAAIRRIPSLFILCLNIN 28
           G G  V  ++S  ++R   +LF++ L I+
Sbjct: 35  GNGMVVYIFLSTKSLRTPSNLFVINLAIS 63


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +2

Query: 260 PCYCTLE 280
           PCYCT E
Sbjct: 1   PCYCTCE 7


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 43  QNE*TRYSSDRRCA 84
           Q+  +RYS +RRC+
Sbjct: 225 QHTSSRYSRERRCS 238


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -3

Query: 168  VLPSDPQTGL*IFPQIHNGGGRAVTEY 88
            VL   P T   +    HN  G AV EY
Sbjct: 1521 VLDLVPATWYHLRVTAHNNAGFAVAEY 1547


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,088
Number of Sequences: 438
Number of extensions: 1613
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5744526
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)