Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_C15
         (326 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55375-4|AAC69042.3|  287|Caenorhabditis elegans Lim domain fami...    26   5.6  
AF016414-4|AAG24021.2|  230|Caenorhabditis elegans Serpentine re...    26   5.6  
AF016414-3|AAW88405.1|  329|Caenorhabditis elegans Serpentine re...    26   5.6  
AC006808-1|AAF60813.1|  486|Caenorhabditis elegans Hypothetical ...    26   5.6  
U80027-12|AAC48126.2|  493|Caenorhabditis elegans Hypothetical p...    26   7.4  

>U55375-4|AAC69042.3|  287|Caenorhabditis elegans Lim domain family
           protein 6 protein.
          Length = 287

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +3

Query: 108 RQFRLRLSRNGKSSRKLKKWVATSETALS 194
           RQF+    R+ K SRK+++ +A +ET LS
Sbjct: 176 RQFKTAFERSSKPSRKVREQLA-NETGLS 203


>AF016414-4|AAG24021.2|  230|Caenorhabditis elegans Serpentine
           receptor, class h protein210, isoform a protein.
          Length = 230

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -3

Query: 240 PSALASPKTAIAGPALIMPFLMLRPIFS--IFLKT 142
           P  L +P  A+AGPA++     LR  +S  IF+ T
Sbjct: 154 PFTLTTPDQAVAGPAILQRLPTLRCFYSDDIFVLT 188


>AF016414-3|AAW88405.1|  329|Caenorhabditis elegans Serpentine
           receptor, class h protein210, isoform b protein.
          Length = 329

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -3

Query: 240 PSALASPKTAIAGPALIMPFLMLRPIFS--IFLKT 142
           P  L +P  A+AGPA++     LR  +S  IF+ T
Sbjct: 154 PFTLTTPDQAVAGPAILQRLPTLRCFYSDDIFVLT 188


>AC006808-1|AAF60813.1|  486|Caenorhabditis elegans Hypothetical
           protein Y58G8A.1 protein.
          Length = 486

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 180 LMLRPIFSIFLKTFHFGSGAAETVDKARTRANTKKNILEK 61
           ++LR I    L  FHFG+ A+++ D+ +  A   K    K
Sbjct: 2   ILLRLISIGVLINFHFGNAASQSTDERKLEAQLLKGYNSK 41


>U80027-12|AAC48126.2|  493|Caenorhabditis elegans Hypothetical
           protein T28A11.17 protein.
          Length = 493

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = -3

Query: 216 TAIAGPALIMPFLMLRPIFSIFLKTFHFGSGAAETVDKARTRANTKKNILEKFIVDIVNF 37
           T I    ++ P+ ++  ++ + +K+    +  +E  D+A     TKKN  EKF   + N 
Sbjct: 68  TYITFDQILSPYSLM--MWYMVVKSMDTPTVGSEFFDEATREYATKKNNSEKFSFALENL 125

Query: 36  NKRNIEL 16
              N+ L
Sbjct: 126 ENLNLTL 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,396,115
Number of Sequences: 27780
Number of extensions: 85162
Number of successful extensions: 240
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)