Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_C14
(512 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0512 + 29675835-29675901,29676681-29676813,29677020-296771... 34 0.077
02_03_0273 + 17173983-17174339,17174423-17174575,17174638-171747... 32 0.31
03_05_1110 - 30466886-30467317,30467522-30467603,30467749-30467810 29 1.7
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072... 29 2.2
01_06_0920 - 33009183-33009335,33009421-33009741,33010221-330103... 29 2.9
12_02_0127 + 13961726-13961947,13962050-13962121,13962288-139630... 27 6.7
12_01_0313 + 2388488-2388560,2389285-2389462,2390221-2390331,239... 27 8.8
08_01_0764 - 7332969-7333870,7334044-7334369,7334712-7335384,733... 27 8.8
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 27 8.8
06_01_1116 + 9197761-9199956 27 8.8
01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,619... 27 8.8
>02_05_0512 +
29675835-29675901,29676681-29676813,29677020-29677164,
29677586-29678407
Length = 388
Score = 33.9 bits (74), Expect = 0.077
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 52 TRCSWNRWSSRVRWCPWCSRIEWC-PRNERRPRVPW 156
T C+ + W++ R PW S WC PR R PR PW
Sbjct: 144 TDCTSSWWNAD-RSPPWWSPSRWCCPRGSRIPRSPW 178
>02_03_0273 +
17173983-17174339,17174423-17174575,17174638-17174700,
17174943-17175026,17175120-17175242,17175466-17175519,
17175669-17175764,17176163-17176258,17177179-17177324,
17178503-17178632,17178697-17179272,17179364-17179462,
17179535-17179687,17179794-17180558,17181384-17181683
Length = 1064
Score = 31.9 bits (69), Expect = 0.31
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +3
Query: 180 RVHKASKEYR-VNEEKSVLLEEMAHLAHQVHH 272
R+ + + YR +EK VLLEE+ HL +Q+H+
Sbjct: 731 RIQEELERYRNFKDEKEVLLEEIQHLKNQLHY 762
>03_05_1110 - 30466886-30467317,30467522-30467603,30467749-30467810
Length = 191
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 91 WCPWCSRIEWCPRNERR 141
WC WCS + W PR RR
Sbjct: 21 WCNWCSSVVW-PRQPRR 36
>10_08_0425 -
17806117-17806401,17806862-17806984,17807076-17807222,
17807307-17807450,17808557-17808668,17808762-17808898,
17809016-17809156,17810921-17811004,17811275-17811742,
17811858-17811936,17812494-17812506,17813884-17814460,
17814502-17814774,17814899-17815045,17815354-17815413,
17816124-17816510
Length = 1058
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -3
Query: 90 SDPGRPSIPGTPRGPGSPF*P*TTAAGSP 4
S P PS+P P P +P P AGSP
Sbjct: 64 SGPAAPSMPANPASPATPGPPRPQFAGSP 92
>01_06_0920 -
33009183-33009335,33009421-33009741,33010221-33010343,
33010476-33010634,33010720-33011086,33011162-33011315,
33011782-33012874
Length = 789
Score = 28.7 bits (61), Expect = 2.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 25 LWSKRRTRTTRCSWNRW 75
LW +R+TRTT C++ W
Sbjct: 627 LWCRRQTRTTACAYIEW 643
>12_02_0127 +
13961726-13961947,13962050-13962121,13962288-13963058,
13963401-13963573,13963973-13964083,13964114-13964460,
13964627-13964652
Length = 573
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +1
Query: 46 RTTRCSWNRWSSRVRWCPWCSRIEWCP 126
+T R W +R RW P + WCP
Sbjct: 410 KTNRYFQLMWVTRKRWAPVYFKSNWCP 436
>12_01_0313 +
2388488-2388560,2389285-2389462,2390221-2390331,
2391280-2391362,2391826-2392027,2392078-2392101,
2392234-2392408,2392482-2392683,2393897-2394036
Length = 395
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +3
Query: 165 DNQDLRVHKASKEYRVNEEKSVLLEEMAHLAHQVH 269
+ +DL ++K+ ++ +V+EEK +EE + H
Sbjct: 115 EEEDLTMYKSHQQLQVSEEKDTTIEENSEKKWHAH 149
>08_01_0764 -
7332969-7333870,7334044-7334369,7334712-7335384,
7336195-7336219
Length = 641
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 67 NRWSSRVRWCPWCSRIEWCPRNERR 141
N+ S +C WC ++ W RN R+
Sbjct: 213 NKKSDGSFYCVWCGKMNWLMRNLRK 237
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 223 FSSFTLYSLEALWTRRSWLSLRTREPSVS 137
F SF L L LW R + R R PS+S
Sbjct: 341 FQSFFLLCLWTLWNHRHDVVFRERPPSIS 369
>06_01_1116 + 9197761-9199956
Length = 731
Score = 27.1 bits (57), Expect = 8.8
Identities = 7/26 (26%), Positives = 16/26 (61%)
Frame = -1
Query: 104 HQGHHLTLEDHLFQEHRVVLVLLFDH 27
+Q H ++E+H + H++++ L H
Sbjct: 634 NQEFHFSIEEHFYSSHQIIIARLVGH 659
>01_01_0009 +
57658-60086,60855-60935,61094-61295,61385-61905,
61996-62114,62248-62345
Length = 1149
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +1
Query: 55 RCSWNRWSSRVRWCPWCSRIEWCPRNERRPRV 150
+C S+ C WC R++W ER +V
Sbjct: 812 QCDVKSGDSKGSACGWCERMKWMKSGERSMQV 843
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,297,142
Number of Sequences: 37544
Number of extensions: 293995
Number of successful extensions: 960
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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