Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_C13
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi...    28   1.3  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    26   5.2  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    25   6.9  
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    25   9.1  
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   9.1  

>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 615

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = -1

Query: 228 IHAH*PLQRKYLQQRSHLNKQIVCDLQLV*NII 130
           IH+H P+ +K LQ+  +LNK +  +L+ V +I+
Sbjct: 78  IHSHLPVLQKGLQECQNLNKSVSQNLKSVMDIL 110


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -1

Query: 192 QQRSHLNKQIVCDLQLV*NII*I*YTVMLVTYYFIKLNVIVWMKAIYYYFAKTGLL 25
           QQ  ++  Q+   + +    + I  +  L+T   +K NVIV    ++Y F   G L
Sbjct: 79  QQAEYIRSQLPAKVGMFYGELSIEMSEQLLTNIILKYNVIVITADLFYLFLARGFL 134


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = -3

Query: 631 KMNATSTALLAWPDGNENNLAQH 563
           K+N T+TALL   DGN+++ A+H
Sbjct: 14  KLN-TTTALLNKKDGNDDDKAEH 35


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -3

Query: 328 VQHQQNFW*FGHQNV---ILFASLVVPHALIPALETHP 224
           V +Q  FW FGH  V   I+ A  VV H +IP+L   P
Sbjct: 236 VLYQHLFWFFGHPEVYILIMPAFGVVSH-IIPSLAHKP 272


>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = +1

Query: 214 LVSMDVFPEQGSKREVPPMMQKVLRFDVQITKSFVDAALKTTALRSL 354
           L+S    PE GS +E+        R   QI   FVDA   T    SL
Sbjct: 124 LISETALPELGSFQELSTSSLGSFRMFQQIAVGFVDALFCTRIPASL 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,092
Number of Sequences: 5004
Number of extensions: 45816
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)