Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_C13
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0213 + 26815889-26816475,26817718-26817788,26817985-268180...    29   2.3  
01_01_1212 + 9763949-9764412,9765183-9765252,9765356-9765457           29   3.1  
04_01_0098 - 1008936-1011185,1011383-1012271,1012336-1013420           28   7.1  
06_01_1055 - 8419587-8421065                                           27   9.4  

>02_05_0213 +
           26815889-26816475,26817718-26817788,26817985-26818073,
           26818910-26818991,26819089-26819204,26819290-26819451,
           26819531-26819680,26819969-26820037,26820375-26820491
          Length = 480

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +3

Query: 579 FSFPSGHASRAVLVAFIL 632
           +SFPSGH+SRA LVA  L
Sbjct: 126 WSFPSGHSSRAFLVAAFL 143


>01_01_1212 + 9763949-9764412,9765183-9765252,9765356-9765457
          Length = 211

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +1

Query: 319 DAALKTTALRSLRNHAKFLEVSCHGIVWLAGWLTFIWLFNNKDLYQLQVNMF 474
           D  LK+   R    +  F  V   G  +L G +  IW  NN  L QL +  F
Sbjct: 136 DLLLKSVTRRGFLINLGFASVLLTGAAFLDGSILEIWKMNNSGLIQLTLYTF 187


>04_01_0098 - 1008936-1011185,1011383-1012271,1012336-1013420
          Length = 1407

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = -2

Query: 350  DLRAVVFSAASTKLLVIWTSKRNTFCIIGGTSRFDPCSGNTSMLTSLYR 204
            DL AVV SA   +    W    + F  +     F PC      + +L+R
Sbjct: 991  DLIAVVSSANVHRFTTFWPQLHDCFAAVSQLPLFSPCPFAEKAIVALFR 1039


>06_01_1055 - 8419587-8421065
          Length = 492

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = -2

Query: 410 PASHTIP*HDTSKNLAWLRSDLRAVVFSAASTKLLVIWTSKRNTFCIIGGTSRFDPCSGN 231
           PA H IP +   +NL   R+++  V+F+A    L     S      ++   S F P    
Sbjct: 143 PAHHFIPPY---RNLEASRAEVEVVIFNAIDDLLAKTGISPAAIDILVVNCSLFAPIPSF 199

Query: 230 TSMLTSLYR 204
           T M+ + Y+
Sbjct: 200 TDMIINNYK 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,878,543
Number of Sequences: 37544
Number of extensions: 258091
Number of successful extensions: 528
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)