Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_C12
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    27   1.4  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    27   2.4  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    26   3.2  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   5.5  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   5.5  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   7.3  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    25   9.6  

>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 82  CALQMRSPAKISPCEEMSLNPQRKRKINTRS 174
           C L  + PA   P + M+ +PQ   K+ T S
Sbjct: 518 CKLMAKLPAHSGPVQSMAFHPQETSKVATSS 548


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 52  NQEKWHQNRGCALQMRSPAKISPCEEMSLNPQRKRKINTRSHP 180
           ++ + HQ   C +++    K+  CE   L  +  R++N R HP
Sbjct: 713 DESRKHQADACIVRVMKDRKV--CEHNQLMAEVTRQLNPRFHP 753


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 224  LPDNPVDTTRLNQT*NYPD*YIYSLSNPQCNLCDLERPTKYLLL 355
            L +NP+ +   +   N PD   Y L      LC L + TK++L+
Sbjct: 1383 LLENPMQSKVTHIILNLPDIEAYVLFVKSLQLCSLYKDTKFILV 1426


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 93  NEIASKNITLRGNVPKSTKEKEDQYPVAPWL 185
           N  +S++    G  P S +    Q+P+ PWL
Sbjct: 188 NNSSSEDTQPNGKRPSSLQSNFSQFPLNPWL 218


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 173 RTLATSSLYFCRLRLSYLPDNPVDTTR 253
           R+L  +S +F RLR +Y+   P+DT R
Sbjct: 268 RSLGANS-HFIRLRSNYISAKPLDTDR 293


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +1

Query: 10  SQPLILENN*QIYYNQEKWHQNRGCALQMRSPAKISPCEEMSLNPQRKRKINTRSHP 180
           S+ ++ ENN    +N +    N+   ++ R P       ++SL P+R       SHP
Sbjct: 128 SEKILAENNHM--FNVKSKLSNKESFIKTRRPRTNGELSDLSLQPKRIFSEPVNSHP 182


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = +1

Query: 70  QNRGCALQMRSPAKISPCEEMSLNPQRKRKINTRSHP 180
           QN  C     S   + PC EM L    +   N+  HP
Sbjct: 445 QNPACFNLDDSAGSLLPCTEMKLVDCEEGNYNSHGHP 481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,298,494
Number of Sequences: 5004
Number of extensions: 47717
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)