Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_C12
         (545 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0519 - 19945456-19945653,19947110-19947112                       50   2e-06
11_06_0495 - 24319531-24320831,24320923-24321109,24322919-243230...    44   8e-05
12_01_0236 - 1775941-1776034,1776185-1776504,1776569-1776786,177...    29   3.2  
01_07_0294 + 42571700-42573373,42573653-42573720,42573785-425738...    27   7.4  

>12_02_0519 - 19945456-19945653,19947110-19947112
          Length = 66

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 22/37 (59%), Positives = 28/37 (75%)
 Frame = +3

Query: 108 KNITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGS 218
           KNIT RG+VP++T +K + YPV P +L  FIFVV GS
Sbjct: 17  KNITKRGSVPETTVKKGNDYPVGPMVLGFFIFVVIGS 53


>11_06_0495 -
           24319531-24320831,24320923-24321109,24322919-24323062,
           24324467-24324469
          Length = 544

 Score = 44.0 bits (99), Expect = 8e-05
 Identities = 19/33 (57%), Positives = 25/33 (75%)
 Frame = +3

Query: 108 KNITLRGNVPKSTKEKEDQYPVAPWLLALFIFV 206
           KNIT RG+VP++T +K + YPV P +L  FIFV
Sbjct: 17  KNITKRGSVPETTVKKGNDYPVGPLVLGFFIFV 49


>12_01_0236 -
           1775941-1776034,1776185-1776504,1776569-1776786,
           1777315-1777723
          Length = 346

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -3

Query: 486 LFL*NFLSERPFYVQSKNKIYKQILKILYEAIIVDIYTCIFL 361
           LFL N ++ +  +VQ K+ +YK  ++    A  + ++ C FL
Sbjct: 52  LFLHNPINHQAIFVQGKSSLYKSPMQAELAAFKLALFICDFL 93


>01_07_0294 +
           42571700-42573373,42573653-42573720,42573785-42573819,
           42573988-42574061,42574491-42574726,42574958-42575044,
           42575356-42575455,42575584-42576003
          Length = 897

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 55  QEKWHQNRGCALQMRSPAKISPCEEMSLNPQRKRKI 162
           QE W Q R  A++ R  A  S  +E   + Q KRK+
Sbjct: 458 QEAWAQERVTAMRAREKAMASLEQEKEKSSQAKRKL 493


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,657,663
Number of Sequences: 37544
Number of extensions: 266217
Number of successful extensions: 626
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)