Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_C12
         (545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81095-2|CAB03157.1|   65|Caenorhabditis elegans Hypothetical pr...    92   3e-19
AF047660-4|AAM54169.1|   63|Caenorhabditis elegans Hypothetical ...    88   3e-18
AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine re...    30   1.2  
AC025716-13|AAL32239.1|  289|Caenorhabditis elegans Serpentine r...    29   1.7  
Z93383-6|CAB07623.1|  283|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U39472-7|AAP86620.2|  339|Caenorhabditis elegans Serpentine rece...    28   3.8  
Z34799-1|CAA84315.1|  147|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AL110487-7|CAB54431.1|  581|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z81115-6|CAD45598.1|  630|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AL132862-33|CAB70222.3|  308|Caenorhabditis elegans Hypothetical...    27   6.7  
AL032658-6|CAA21747.2|  630|Caenorhabditis elegans Hypothetical ...    27   6.7  
Z93383-12|CAB07628.2|  283|Caenorhabditis elegans Hypothetical p...    27   8.8  
Z29094-2|CAA82339.3|  590|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z81095-2|CAB03157.1|   65|Caenorhabditis elegans Hypothetical
           protein F59F4.2 protein.
          Length = 65

 Score = 91.9 bits (218), Expect = 3e-19
 Identities = 39/63 (61%), Positives = 51/63 (80%)
 Frame = +3

Query: 63  MAPKQRMRIANEIASKNITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGSAIFQIIQS 242
           MAPKQRM +AN+  SKN+  RGNV KS K  ED+YP APWL+ LF+FVVCGSA+F+II+ 
Sbjct: 1   MAPKQRMTLANKQFSKNVNNRGNVAKSLKPAEDKYPAAPWLIGLFVFVVCGSAVFEIIRY 60

Query: 243 IRL 251
           +++
Sbjct: 61  VKM 63


>AF047660-4|AAM54169.1|   63|Caenorhabditis elegans Hypothetical
           protein T09A12.5 protein.
          Length = 63

 Score = 88.2 bits (209), Expect = 3e-18
 Identities = 38/63 (60%), Positives = 49/63 (77%)
 Frame = +3

Query: 63  MAPKQRMRIANEIASKNITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGSAIFQIIQS 242
           MAPKQRM +AN   SKN+T RGNVPK  K  E ++P + WL+ LFIFVVCGSAIF++I+ 
Sbjct: 1   MAPKQRMAVANAQFSKNVTQRGNVPKGNKTNESKFPTSQWLIGLFIFVVCGSAIFEVIRY 60

Query: 243 IRL 251
           I++
Sbjct: 61  IKV 63


>AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 66 protein.
          Length = 286

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 441 SKNKIYKQILKILYEAIIVDIYTCIFLAHNKRYFVGRSKS 322
           SK   +K    ++Y    +DI    F+ HNK Y+V R  S
Sbjct: 33  SKRITWKSEFSLIYTRFAIDIVYTFFVPHNKIYYVLRQIS 72


>AC025716-13|AAL32239.1|  289|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 64 protein.
          Length = 289

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 441 SKNKIYKQILKILYEAIIVDIYTCIFLAHNKRYFVGR 331
           SK   +K  L ++Y     D++   F+ HNK Y++ R
Sbjct: 34  SKRIAWKSELSLIYTRFAFDMFYTFFVPHNKIYYIIR 70


>Z93383-6|CAB07623.1|  283|Caenorhabditis elegans Hypothetical
           protein F54B8.6 protein.
          Length = 283

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 441 SKNKIYKQILKILYEAIIVDIYTCIFLAHNKRYFV 337
           SK  I+K  L I Y    +D++  + ++ NK YF+
Sbjct: 33  SKKIIFKPSLSIFYCRFFIDVFLTLSVSINKTYFL 67


>U39472-7|AAP86620.2|  339|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 35 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -2

Query: 184 SQGATGY*SSFSFVDLGTFPRKVIFLLAISFAMRILCFGA-IFLGYSIFVS 35
           S+G TGY  +  F+       +V++ L + FA+ +LC  A + + +SIF S
Sbjct: 162 SEGPTGYKLASCFMQKDIPLDRVLYTLGMYFALSLLCLLANLTIIFSIFKS 212


>Z34799-1|CAA84315.1|  147|Caenorhabditis elegans Hypothetical
           protein F34D10.3 protein.
          Length = 147

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 148 FVDLGTFPRKVIFLLAISFAMRILCFGAIFLGYSIF 41
           F+D  +  ++ IFL  I FA    CFG +F  Y+I+
Sbjct: 26  FLDNSSGDKQYIFLCLIVFATDAACFGVLF--YNIY 59


>AL110487-7|CAB54431.1|  581|Caenorhabditis elegans Hypothetical
           protein Y39E4B.10 protein.
          Length = 581

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 474 NFLSERPFYVQSKNKIYKQILKILYEAIIVD 382
           NF     F+  SKNKI+  ++K LY   I D
Sbjct: 359 NFKKSNTFFQFSKNKIFNFLIKNLYTNAICD 389


>Z81115-6|CAD45598.1|  630|Caenorhabditis elegans Hypothetical
           protein Y76A2B.6 protein.
          Length = 630

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -2

Query: 160 SSFSFVDLGTFPRKVIFLLAISFA-MRILCFGAIFLGYSI 44
           SS  F +   FP K+IF ++++F  + +L F  IF+ ++I
Sbjct: 578 SSVFFSNFQLFPLKIIFSVSVNFVNIALLVFLPIFITHTI 617


>AL132862-33|CAB70222.3|  308|Caenorhabditis elegans Hypothetical
           protein Y73F8A.3 protein.
          Length = 308

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -3

Query: 450 YVQSKNKIYKQILKILYEAIIVDIYT---CIFLAHNKRYFVGRSKSH 319
           Y+     I+  +  IL   + +DI+T   C+FL   + +FV RS  H
Sbjct: 42  YLLLSFSIFNMVYSILNVLVPIDIHTYSYCMFLIIKRGWFVERSDLH 88


>AL032658-6|CAA21747.2|  630|Caenorhabditis elegans Hypothetical
           protein Y76A2B.6 protein.
          Length = 630

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -2

Query: 160 SSFSFVDLGTFPRKVIFLLAISFA-MRILCFGAIFLGYSI 44
           SS  F +   FP K+IF ++++F  + +L F  IF+ ++I
Sbjct: 578 SSVFFSNFQLFPLKIIFSVSVNFVNIALLVFLPIFITHTI 617


>Z93383-12|CAB07628.2|  283|Caenorhabditis elegans Hypothetical
           protein F54B8.7a protein.
          Length = 283

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 441 SKNKIYKQILKILYEAIIVDIYTCIFLAHNKRYFV 337
           SK   ++  L I Y   I+D++  + ++ NK YF+
Sbjct: 33  SKRIAFRPSLSIFYCRFIIDVFLTLSVSINKAYFL 67


>Z29094-2|CAA82339.3|  590|Caenorhabditis elegans Hypothetical
           protein C07A9.4 protein.
          Length = 590

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -3

Query: 114 YFCWRSHLQCASSVLVPFFLVI---VYLSVIF 28
           Y  W  +++CASS  V   L+I   +Y+ V+F
Sbjct: 80  YVLWTRYVECASSPAVRIILIITGVIYMLVLF 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,575,382
Number of Sequences: 27780
Number of extensions: 263173
Number of successful extensions: 674
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)