Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_C11
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...   196   2e-51
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...   194   6e-51
SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces...    26   3.4  
SPAC12G12.05c |taf9||transcription initiation factor Taf9|Schizo...    26   4.5  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   6.0  

>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score =  196 bits (478), Expect = 2e-51
 Identities = 95/193 (49%), Positives = 123/193 (63%), Gaps = 4/193 (2%)
 Frame = +3

Query: 9   VIFFRKGVRSVKANGQKVMYDFEGKINQAVFPGLQGGPHNHXXXXXXXXMKQATSPEFIE 188
           +IF+RKG RS    G  ++Y+ E KIN +VFPG QGGPHNH        + QA +PEF +
Sbjct: 258 MIFYRKGTRSHDKRGNPILYELEDKINFSVFPGHQGGPHNHTITALAVALGQAKTPEFYQ 317

Query: 189 YQKQVIKNAQRLCEGLISRGYAIATGGTDVHLALVDLRSVGLTGAPGERILELCSIACNK 368
           YQK V+ NA+ +    I+RGY + +GGTD HL LVDL   G+ GA  ERILEL +I+ NK
Sbjct: 318 YQKDVLSNAKAMANAFITRGYKLVSGGTDTHLVLVDLTDKGVDGARVERILELVNISANK 377

Query: 369 NTVPGDKSALNPSGVRLGTPALTTRGLKESDIDXVVNYIDQALKIAQTIVEVS----GPK 536
           NTVPGDKSAL P G+RLGTPA TTRG  E D + VV  ID+ + + + I E +      K
Sbjct: 378 NTVPGDKSALIPRGLRLGTPACTTRGFDEKDFERVVELIDEVVSLTKKINEAALKEGKSK 437

Query: 537 LADFNKAIEENSE 575
             DF   + + S+
Sbjct: 438 FRDFKAYVGDGSK 450


>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score =  194 bits (474), Expect = 6e-51
 Identities = 96/192 (50%), Positives = 121/192 (63%), Gaps = 3/192 (1%)
 Frame = +3

Query: 9   VIFFRKGVRSVKANGQKVMYDFEGKINQAVFPGLQGGPHNHXXXXXXXXMKQATSPEFIE 188
           +IFFR+G+R     G  + YD E KIN +VFPG QGGPHNH        +KQ   P + E
Sbjct: 252 MIFFRRGLRKHDKKGNPIYYDLEDKINFSVFPGHQGGPHNHTITALAVALKQCQEPAYKE 311

Query: 189 YQKQVIKNAQRLCEGLISRGYAIATGGTDVHLALVDLRSVGLTGAPGERILELCSIACNK 368
           YQ QV+KNA+   E    RGY +A  GTD H+ LVD++S G+ GA  ER+LEL +I  NK
Sbjct: 312 YQAQVVKNAKVCEEEFKKRGYKLAADGTDSHMVLVDVKSKGVDGARAERVLELINIVTNK 371

Query: 369 NTVPGDKSALNPSGVRLGTPALTTRGLKESDIDXVVNYIDQALKIA---QTIVEVSGPKL 539
           NTVP DKSA +PSG+R+GTPA+TTRG KE D   VV+YID+AL  A   Q  +     KL
Sbjct: 372 NTVPSDKSAFSPSGIRVGTPAMTTRGFKEQDFVRVVDYIDRALTFAANLQKELPKDANKL 431

Query: 540 ADFNKAIEENSE 575
            DF   + E  +
Sbjct: 432 KDFKAKLGEGEQ 443


>SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = +3

Query: 177 EFIEYQKQVIKNAQRLCEGLISRGYAIAT-----GGTDVHLALVDLRS 305
           E IE Q++V+KN QRL +     G    T        DVH  +VDL S
Sbjct: 152 EKIEMQEKVLKNFQRLQKEFREEGLEFITLDASSSLEDVHSQIVDLVS 199


>SPAC12G12.05c |taf9||transcription initiation factor
           Taf9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 163

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +3

Query: 189 YQKQVIKNAQRLCEGLISRGYAIATGGTDVHLALVDLRSVGLTGAPGERILELCSIACNK 368
           Y +Q+I+++Q   E   SRG        DV LA+    +   TG P +  L   ++  N+
Sbjct: 47  YTQQLIQDSQVYAEH--SRGQNAPISVEDVRLAVASQINHSFTGPPPKEFLLELAMERNR 104

Query: 369 NTVP 380
             +P
Sbjct: 105 KPLP 108


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 388 LSPGTVFLLQAILHSSRIRSPGAPVSPTLR 299
           LSP      QAI  SS  RS G P +P++R
Sbjct: 92  LSPSFNTSYQAIPSSSSNRSRGGPYTPSIR 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,309,955
Number of Sequences: 5004
Number of extensions: 44636
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)