Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_C09
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha...    25   7.8  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    25   7.8  
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p...    25   7.8  

>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +2

Query: 86  LNDDLSVNYGAIPSYAKFLADNGIKSVLVGGTTGEHMSLAVSDRKKVITEWVKVSKT 256
           L DD++   G +   AK L DNG K+V    T G     A+    +   E V V+ T
Sbjct: 221 LVDDMADTCGTLGLAAKTLKDNGAKAVYAIVTHGILSGKAIKVINESALEKVIVTNT 277


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 436 EITSSLLSRTXYEQGGNKYAGFCERGYSS 522
           EIT+S  S   Y + G+ +A +CE+  SS
Sbjct: 374 EITTSWGSPKSYSEIGDLFARYCEKKISS 402


>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +2

Query: 128 YAKFLADNGIKSVLVGGTTGEHMSLAVSDRKKVITEWVKVSKTT 259
           YAK     G+++ LV  +  E +S  +    +V+ +  ++SKT+
Sbjct: 74  YAKARQKPGVRNHLVSASVAEVVSCGILAPAEVVRQRAQISKTS 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,867,851
Number of Sequences: 5004
Number of extensions: 58788
Number of successful extensions: 157
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)