Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_C09
(695 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0046 + 10114402-10114535,10116438-10117365 44 9e-05
04_04_0873 - 28905240-28906061 44 1e-04
03_01_0136 + 1069136-1069292,1070783-1071060,1071246-1071602,107... 33 0.22
11_06_0738 - 26807046-26807129,26807720-26807957,26809374-268115... 32 0.38
12_02_1066 + 25785749-25785868,25785953-25786141,25786250-257864... 31 0.87
03_05_0026 + 19966616-19966703,19967992-19968058,19968599-199686... 30 2.0
03_02_0528 + 9189215-9189330,9190111-9190204,9190654-9190743,919... 29 4.7
01_05_0722 + 24598426-24598649,24599113-24599219,24599319-245993... 28 6.2
07_01_0835 - 6780994-6781677,6784173-6785969,6787362-6787595 28 8.1
>04_03_0046 + 10114402-10114535,10116438-10117365
Length = 353
Score = 44.4 bits (100), Expect = 9e-05
Identities = 42/158 (26%), Positives = 67/158 (42%)
Frame = +2
Query: 74 VFTPLNDDLSVNYGAIPSYAKFLADNGIKSVLVGGTTGEHMSLAVSDRKKVITEWVKVSK 253
V TP D + A S D G + V+VGGTTGE ++ + +I V
Sbjct: 60 VKTPYLPDGRFDLEAYDSLINMQIDGGAEGVIVGGTTGEGHLMSWDEHIMLIGHTVNCFG 119
Query: 254 TTGLHIQVQVGGAPLADVLDLAAYCQDVGVDSLLTLPELYFKPATVAELVSYVELVANAA 433
+ + G + + VG+ + L + Y K ++ L+S+ E V
Sbjct: 120 AK-VKVVGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGK-TSIEGLISHFEAV---L 174
Query: 434 PKLPVLYYHVPXMSRVEINMPAFVKEATARISNFKGLK 547
P P + Y+VP SR ++P V EA + +N G+K
Sbjct: 175 PMGPTIIYNVP--SRTGQDIPPAVIEAVSSFTNLAGVK 210
>04_04_0873 - 28905240-28906061
Length = 273
Score = 44.0 bits (99), Expect = 1e-04
Identities = 38/134 (28%), Positives = 61/134 (45%)
Frame = +2
Query: 146 DNGIKSVLVGGTTGEHMSLAVSDRKKVITEWVKVSKTTGLHIQVQVGGAPLADVLDLAAY 325
+ G + V+VGGTTGE ++ + +I V T + + G + +
Sbjct: 4 EGGAEGVIVGGTTGEGHLMSWDEHIMLIGHTVNCFGTK-IKVVGNTGSNSTREAIHATEQ 62
Query: 326 CQDVGVDSLLTLPELYFKPATVAELVSYVELVANAAPKLPVLYYHVPXMSRVEINMPAFV 505
VG+ + L + Y K +V L+S+ E V P P + Y+VP SR ++P V
Sbjct: 63 GFAVGMHAALHINPYYGK-TSVEGLISHFEAV---LPMGPTIIYNVP--SRTGQDIPPAV 116
Query: 506 KEATARISNFKGLK 547
EA + SN G+K
Sbjct: 117 IEAVSSFSNMAGVK 130
>03_01_0136 +
1069136-1069292,1070783-1071060,1071246-1071602,
1071706-1072119,1072221-1072302,1072429-1073093
Length = 650
Score = 33.1 bits (72), Expect = 0.22
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Frame = +2
Query: 296 LADVLDLAAYCQDVGVDSLLTLPELYFKPATVAELVSYVELVANAAPK--LPVLYYHVPX 469
L + L +A Q++ S + PE++ +T + SYV +++ + +H
Sbjct: 311 LQEFLSVATASQELINGSTSSYPEMWLGASTSS--ASYVNELSSLVEMGGVGTSNHHESA 368
Query: 470 MSRVEINMPAFVKEATARISNFKGLKFTSNDLNE 571
+VEI K+ R+ N +G+K +NDL E
Sbjct: 369 RLQVEIADMEVFKDEKKRVENLRGVKLVNNDLGE 402
>11_06_0738 - 26807046-26807129,26807720-26807957,26809374-26811509,
26812145-26813253
Length = 1188
Score = 32.3 bits (70), Expect = 0.38
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 15/140 (10%)
Frame = +2
Query: 68 PPVFTPLNDDLSVNYGAIPSYAKFLADNGIKSVLVGGTTGEHMSLAVSDRKK----VITE 235
PP L+ +V + + Y F+ + + VLV G+ S+ + D K V
Sbjct: 642 PPTSMRLSQVRTVAFFGVLKYMPFVMEFRLIKVLVLHILGDEDSIGIFDLTKISELVRLR 701
Query: 236 WVKVSKTTGLHIQVQVGGAPLADVLDLAAYCQDVGVDSL------LTLPELYFKPATVAE 397
++KV+ + + Q+ G P + L + +V D LTLP P+ +
Sbjct: 702 YLKVTSNVTVKLPTQMQGLPYLETLKIDGTISEVPTDIYLPRLLHLTLPAKTNLPSGIVH 761
Query: 398 LVS-----YVELVANAAPKL 442
+ S Y +L N+A L
Sbjct: 762 MTSLRTIGYFDLSCNSAENL 781
>12_02_1066 +
25785749-25785868,25785953-25786141,25786250-25786414,
25786649-25786999,25787924-25788001,25788137-25788277,
25788415-25788459,25788597-25788763,25788833-25788911,
25788985-25789067,25789219-25789348,25789432-25789564,
25789955-25790103,25790339-25790534,25791086-25791288
Length = 742
Score = 31.1 bits (67), Expect = 0.87
Identities = 41/116 (35%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Frame = +2
Query: 275 VQVGGAPLADVLDLAAYCQDVGVDSLLTLPELYFKPATVAELVSYVELVANAAPKLPVLY 454
V V P+A LA+YC G+D L +Y+ A AELV V++ LPV
Sbjct: 54 VVVAPPPVAAAAKLASYCWTAGLDGFL----VYWDFA-AAELVRKVQV------GLPVHS 102
Query: 455 YHVPXMSRV----EINMP-AFVK-EATARISNFK-GLKFTSNDLNEGAQVLRSLXE 601
+P ++R+ EI P AFV E T++ SN K + DL +G QV L E
Sbjct: 103 MVIPNIARISRGAEIYTPFAFVSVEDTSKPSNEKLRGQLRIYDLTKGRQVGSLLAE 158
>03_05_0026 +
19966616-19966703,19967992-19968058,19968599-19968677,
19969140-19969231,19969961-19970396,19973749-19974099
Length = 370
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +2
Query: 524 ISNFKGLKFTSNDLNEGAQVLRSLXEGQE----MFLGAD-TLLAPAALLG 658
+++ KGL T DL ++LRSL E E M + +D + + PA+LLG
Sbjct: 167 VNDLKGLGATYTDLEVAQKMLRSLQEKYETLVTMLINSDMSRMTPASLLG 216
>03_02_0528 +
9189215-9189330,9190111-9190204,9190654-9190743,
9191601-9191717,9192187-9192259,9192335-9192453,
9192569-9192690,9192777-9192953,9193189-9193333,
9193458-9193636,9193742-9193991
Length = 493
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Frame = +2
Query: 341 VDSLLTLPELYFKPAT----VAELVSYVELVANA 430
V SL+TLP + F+P T +AEL+ Y EL+ A
Sbjct: 117 VTSLVTLPVIIFEPMTMLQKMAELMEYCELLDKA 150
>01_05_0722 +
24598426-24598649,24599113-24599219,24599319-24599374,
24599469-24599675,24599757-24599963,24600037-24600123,
24600167-24600208,24600209-24600304,24600406-24600621,
24600693-24600875,24601014-24601241
Length = 550
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +2
Query: 146 DNGIKSVLVGGTTGEHMSLAVSDRKKVITEWVKVSKTTGLHIQVQVGGAPLADVL 310
D G+ + VGG G H+S D+ V +K K G QV A L +L
Sbjct: 55 DAGMSAAEVGGVVGSHLSETRFDQCPVSPLSLKAIKDAGYEKMTQVQEATLPIIL 109
>07_01_0835 - 6780994-6781677,6784173-6785969,6787362-6787595
Length = 904
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 366 SGSVNNESTPTSWQYAARSKTSASGAPPTCT 274
S S+N S T++ Y + S T +GAP +CT
Sbjct: 83 SSSIN--SIATAYSYRSMSDTHGTGAPTSCT 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,140,193
Number of Sequences: 37544
Number of extensions: 405879
Number of successful extensions: 1025
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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