Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_C09
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ...    33   0.26 
Z37983-3|CAA86056.1|  621|Caenorhabditis elegans Hypothetical pr...    32   0.34 
U28739-7|AAB93458.1|  681|Caenorhabditis elegans Cell division c...    27   9.7  
U28739-6|AAM54206.1|  695|Caenorhabditis elegans Cell division c...    27   9.7  
U28739-4|AAM54205.1|  693|Caenorhabditis elegans Cell division c...    27   9.7  
U28739-3|AAB93459.1| 1063|Caenorhabditis elegans Cell division c...    27   9.7  
AY661746-1|AAT74545.1|  695|Caenorhabditis elegans CDC-14 phosph...    27   9.7  
AY661745-1|AAT74544.1|  681|Caenorhabditis elegans CDC-14 phosph...    27   9.7  
AY661744-1|AAT74543.1| 1063|Caenorhabditis elegans CDC-14 phosph...    27   9.7  
AY661743-1|AAT74542.1|  693|Caenorhabditis elegans CDC-14 phosph...    27   9.7  
AF000363-1|AAB94407.1|  681|Caenorhabditis elegans protein phosp...    27   9.7  
AC024827-1|AAF60806.2|  581|Caenorhabditis elegans Hypothetical ...    27   9.7  

>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
           protein R52.2 protein.
          Length = 1019

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
 Frame = +2

Query: 272 QVQVGGAPLADVLDLAAYCQDVGVDSLLTLPELYFKP-ATVAELVSYVELVANAAPKLPV 448
           +VQ G   +A+  D   +  +    S+LTL  + + P A +A+L        N A + P 
Sbjct: 469 RVQFGTTAIAESQDFPIHSTENSTTSMLTLTSMKYTPDAPIAQL--------NEAEETPQ 520

Query: 449 LYYHVPXMSRVEINMPAFVKEATARISNFKGLKFTSN 559
           L   VP + + E  +P  +   T  + N KG +   N
Sbjct: 521 LPSDVPMLFQ-ERELPVSMMSTTVNVENIKGEQIPVN 556


>Z37983-3|CAA86056.1|  621|Caenorhabditis elegans Hypothetical
           protein B0393.3 protein.
          Length = 621

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
 Frame = +2

Query: 134 KFLADNGIKSVLVGGTTGEHMSLAVSDRKKVITEWVKVSKTTGLHIQVQVGGAPLADV-L 310
           KFL D    S    G++ EH+SL+    K + +  +   KT      + + G    D+  
Sbjct: 280 KFLGDLSDLSTSPAGSSIEHLSLSFC--KNIGSNGISKLKTLPNLKSLNLDGVSKRDIST 337

Query: 311 DLAAYCQDVGVDSLLTLPELYFKPATVAELVSYVE 415
            L A  Q   ++ LL   + Y  P T+AE V+  E
Sbjct: 338 GLEAIGQAGRLERLLVSEDTYVNPKTIAEFVNTCE 372


>U28739-7|AAB93458.1|  681|Caenorhabditis elegans Cell division
           cycle related protein14, isoform c protein.
          Length = 681

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +3

Query: 519 LVYQTSRVSSSLQMTLTKEPRSYVLSXRAKRCFSELTRY 635
           + Y+T   S +   TLT+ P S V    A R  SE TRY
Sbjct: 523 VAYRTRNSSGNTTSTLTRTPASAVFPSMASR-RSETTRY 560


>U28739-6|AAM54206.1|  695|Caenorhabditis elegans Cell division
           cycle related protein14, isoform d protein.
          Length = 695

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +3

Query: 519 LVYQTSRVSSSLQMTLTKEPRSYVLSXRAKRCFSELTRY 635
           + Y+T   S +   TLT+ P S V    A R  SE TRY
Sbjct: 523 VAYRTRNSSGNTTSTLTRTPASAVFPSMASR-RSETTRY 560


>U28739-4|AAM54205.1|  693|Caenorhabditis elegans Cell division
           cycle related protein14, isoform a protein.
          Length = 693

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +3

Query: 519 LVYQTSRVSSSLQMTLTKEPRSYVLSXRAKRCFSELTRY 635
           + Y+T   S +   TLT+ P S V    A R  SE TRY
Sbjct: 523 VAYRTRNSSGNTTSTLTRTPASAVFPSMASR-RSETTRY 560


>U28739-3|AAB93459.1| 1063|Caenorhabditis elegans Cell division
           cycle related protein14, isoform b protein.
          Length = 1063

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +3

Query: 519 LVYQTSRVSSSLQMTLTKEPRSYVLSXRAKRCFSELTRY 635
           + Y+T   S +   TLT+ P S V    A R  SE TRY
Sbjct: 523 VAYRTRNSSGNTTSTLTRTPASAVFPSMASR-RSETTRY 560


>AY661746-1|AAT74545.1|  695|Caenorhabditis elegans CDC-14
           phosphatase isoform D protein.
          Length = 695

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +3

Query: 519 LVYQTSRVSSSLQMTLTKEPRSYVLSXRAKRCFSELTRY 635
           + Y+T   S +   TLT+ P S V    A R  SE TRY
Sbjct: 523 VAYRTRNSSGNTTSTLTRTPASAVFPSMASR-RSETTRY 560


>AY661745-1|AAT74544.1|  681|Caenorhabditis elegans CDC-14
           phosphatase isoform C protein.
          Length = 681

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +3

Query: 519 LVYQTSRVSSSLQMTLTKEPRSYVLSXRAKRCFSELTRY 635
           + Y+T   S +   TLT+ P S V    A R  SE TRY
Sbjct: 523 VAYRTRNSSGNTTSTLTRTPASAVFPSMASR-RSETTRY 560


>AY661744-1|AAT74543.1| 1063|Caenorhabditis elegans CDC-14
           phosphatase isoform B protein.
          Length = 1063

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +3

Query: 519 LVYQTSRVSSSLQMTLTKEPRSYVLSXRAKRCFSELTRY 635
           + Y+T   S +   TLT+ P S V    A R  SE TRY
Sbjct: 523 VAYRTRNSSGNTTSTLTRTPASAVFPSMASR-RSETTRY 560


>AY661743-1|AAT74542.1|  693|Caenorhabditis elegans CDC-14
           phosphatase isoform A protein.
          Length = 693

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +3

Query: 519 LVYQTSRVSSSLQMTLTKEPRSYVLSXRAKRCFSELTRY 635
           + Y+T   S +   TLT+ P S V    A R  SE TRY
Sbjct: 523 VAYRTRNSSGNTTSTLTRTPASAVFPSMASR-RSETTRY 560


>AF000363-1|AAB94407.1|  681|Caenorhabditis elegans protein
           phosphatase CDC14 protein.
          Length = 681

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +3

Query: 519 LVYQTSRVSSSLQMTLTKEPRSYVLSXRAKRCFSELTRY 635
           + Y+T   S +   TLT+ P S V    A R  SE TRY
Sbjct: 523 VAYRTRNSSGNTTSTLTRTPASAVFPSMASR-RSETTRY 560


>AC024827-1|AAF60806.2|  581|Caenorhabditis elegans Hypothetical
           protein Y55F3AR.3 protein.
          Length = 581

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
 Frame = +2

Query: 134 KFLADNGIKSVLVGGTTGEHMSLAVSDRKKVITEWVKVSKTTGLHIQVQVGGAPLADV-- 307
           K +ADNG+K V+  G  G+ M L   ++ K++   +  SK     +   VG  P A +  
Sbjct: 314 KAIADNGVKVVVAAGKFGD-MYLHFLNKYKIMAVRL-TSKFDLRRLCRTVGAQPQARICA 371

Query: 308 --LDLAAYCQDVGVDSL 352
             ++L  +C  V V  +
Sbjct: 372 PAVNLLGHCDSVAVQEI 388


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,889,090
Number of Sequences: 27780
Number of extensions: 333783
Number of successful extensions: 835
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)