Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_C08
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...   142   2e-35
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...   138   4e-34
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   1.5  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    27   2.6  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   5.9  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    25   5.9  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    25   7.8  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score =  142 bits (345), Expect = 2e-35
 Identities = 67/131 (51%), Positives = 92/131 (70%)
 Frame = +2

Query: 170 KQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGS 349
           + I  ++ + IPE ++V +K+RLVTVKGPRGVLK+N + + ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQG-NTIKFIVWHGS 61

Query: 350 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIEIRNFLGEKYI 529
           +K  A +RT  S + NMI GVT+GF+YKMR VYAHFPIN   TE  T++EIRNFLGE+  
Sbjct: 62  RKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121

Query: 530 RRVKMAPGVTV 562
           R +K  PGVTV
Sbjct: 122 RVIKCLPGVTV 132


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =  138 bits (335), Expect = 4e-34
 Identities = 65/131 (49%), Positives = 91/131 (69%)
 Frame = +2

Query: 170 KQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGS 349
           + I  ++ + IP+ +TV +K+R VTV GPRG LK+N +H+ ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGS 61

Query: 350 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIEIRNFLGEKYI 529
           +K  A +R+V S + NMI GVT+GF+YKMR VYAHFPIN   TE  T++EIRNFLGE+  
Sbjct: 62  RKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121

Query: 530 RRVKMAPGVTV 562
           R +K  PGVTV
Sbjct: 122 RVIKCLPGVTV 132


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 19/90 (21%), Positives = 44/90 (48%)
 Frame = +2

Query: 230  SRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGSKKELAAVRTVCSHVENMIKG 409
            S+L  +   + ++ RN + L++  ++VN     +E W G +   +AV T  + ++++ + 
Sbjct: 1111 SKLCNLLNDKNIVVRN-QSLSLFHQLVNKYPFLLESWIGLQLVQSAVNTNTADIDDLYRL 1169

Query: 410  VTKGFQYKMRAVYAHFPINCVTTEGNTIIE 499
            ++K     +        + CV T   TI++
Sbjct: 1170 LSKIPTNLLDLPMFQVYLGCVDTLIQTIVK 1199


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 249 FTVTKRDFTWTVRLSGIFTFWFATICFILGPKNK*TVNNLTYE 121
           + VT   F + V + G  +  FA IC I+ PK++   N   YE
Sbjct: 536 YPVTGPSFNYAVVIMGGVSI-FAIICTIVIPKSRWVANRYRYE 577


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 376 SMLSCRKHDQRCDQGIPIQDACSVRSFPYQLCHH--*GKHNY 495
           S L+CR+   +CD G P  + C  RS   Q C +   GK NY
Sbjct: 22  SCLACRRKKLKCDHGRPCSN-CLKRS-TIQSCIYIDPGKTNY 61


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 363 ASSFLEPNHFSTFNWRGLTMRMSTAKCLKF 274
           +SS   PNH ++   RGLT   ST    K+
Sbjct: 278 SSSNTSPNHLASVPNRGLTSNSSTGSFTKY 307


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 265 NSARTFHCHQTRFHMDGETLRNLH 194
           +S R FH  Q+ FH++G    N++
Sbjct: 573 HSVRFFHAIQSHFHLEGPIRYNMN 596


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,309,585
Number of Sequences: 5004
Number of extensions: 45288
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)