Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_C07
(584 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 33 0.041
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 28 1.2
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 28 1.2
SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomy... 28 1.2
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 1.5
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe... 27 2.7
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 26 3.5
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 26 4.7
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 8.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.1
>SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 156
Score = 32.7 bits (71), Expect = 0.041
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +2
Query: 23 MFGKIVFLLLVALCVGVQSRYLIVSEPVYYIQHYEEPELLTSSRV 157
MFGK+ LL+ A + +Q + + P+ ++H E ELL ++RV
Sbjct: 1 MFGKVSSLLVFASFLIIQGAFATLVAPIGDLEHLSEIELLYTNRV 45
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 185 LNSDCTSGAGVKVPFAGNDKNIVSAIGSLDLTNRQKLGAAT 307
+ SDC S GV V GN N +G++D T + + T
Sbjct: 15 VKSDCISNNGVNVKDVGNALN-EGVVGAIDATRKMVVSLGT 54
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 391 SCRPSESLPPTITTTSQRRLSPPEICQISLMYPTSTLS 504
S RP E++ T++TTS S I+ YP+STLS
Sbjct: 580 SSRPEETIS-TVSTTSTVSESGSSSASITSTYPSSTLS 616
>SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 194
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 24 CSGRSSFYCLSLCASAFKAD 83
C G SSFYCLS+ +K D
Sbjct: 132 CQGYSSFYCLSIFDRYYKPD 151
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 334 RPRSKSHGY-THPPVRRQGDSCRPSESLPPTITTTSQRRLSPPEI 465
+P +S+GY ++PP +G S RPS L +L+P EI
Sbjct: 127 QPLPQSYGYPSYPPAGYRGGSARPSGVLANDEVYRVLAQLAPNEI 171
>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 325
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = -1
Query: 524 HIVYSAPDSVEVGYXSDIWHISGGESLRCDVVVIVGGRDSLGRQLSPCLRTGGC 363
++ ++ SV V + + +S GE+ D+V++VG ++G + GC
Sbjct: 121 NLSFTEAASVGVPFTTAYLALSRGETKGSDIVLVVGALGAVGSAVCQIAEDWGC 174
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 26.2 bits (55), Expect = 3.5
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -3
Query: 315 TPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVQSELSVRAPCASLRTLELVN 139
TP + APS S ++ + ++ P + T +P+P + S S +P SLR L
Sbjct: 299 TPGIDAPSDLEAKFSDLGVSSVVSVTSPLQSCTNSPSPPLSSPASSASPSESLRNESLGI 358
Query: 138 SSGSS 124
S S
Sbjct: 359 KSAKS 363
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 545 CTNLIXEHIVYSAPDSVEV 489
C+NL E + YS+PD V V
Sbjct: 425 CSNLCTEIVEYSSPDEVAV 443
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 240 SLPAKGTLTPAPEVQSE 190
SLPA GT TP+P V +
Sbjct: 725 SLPAAGTATPSPVVSQQ 741
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 8.1
Identities = 21/79 (26%), Positives = 32/79 (40%)
Frame = +1
Query: 343 SKSHGYTHPPVRRQGDSCRPSESLPPTITTTSQRRLSPPEICQISLMYPTSTLSGAE*TI 522
+ S G + P+ SC S S+PPT +T+ + P S P S + T
Sbjct: 322 TSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSS-TG 380
Query: 523 CSXIRLVHQRAPLTRTSSI 579
S L+ T ++SI
Sbjct: 381 TSSSPLLSTSTSCTTSTSI 399
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,319,454
Number of Sequences: 5004
Number of extensions: 46462
Number of successful extensions: 157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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