Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_C07
(584 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0066 - 978018-978500,978588-979034,979113-979412,979521-97... 31 0.68
04_02_0006 + 8455219-8457469,8457560-8457924 30 1.6
03_06_0262 + 32730927-32731634,32731713-32732159,32732247-327331... 30 1.6
12_02_0412 - 18799217-18801061 29 2.1
07_03_0342 + 16963528-16963598,16963668-16964235,16964350-169647... 29 2.1
05_04_0434 - 21188640-21188963 29 2.1
10_03_0036 - 7286425-7286463,7286686-7286974,7287306-7288192,728... 29 2.7
10_01_0169 - 1899491-1899666,1901358-1901638,1902468-1902477,190... 29 2.7
07_03_1455 - 26659480-26659758,26659907-26660149 29 2.7
12_02_0591 + 20864861-20867329 28 4.8
11_04_0039 + 12679350-12680057,12680136-12680582,12680670-126815... 28 4.8
07_03_0115 - 13574601-13574645,13574710-13574781,13575990-13576469 28 4.8
11_03_0217 - 11828305-11828343,11828449-11828487,11828573-118288... 28 6.3
02_03_0247 - 16809742-16809780,16810070-16810298,16810381-168105... 28 6.3
08_01_1037 - 10536547-10536585,10536814-10537102,10537202-105373... 27 8.3
07_01_1161 - 10991245-10991283,10991389-10991427,10991513-109917... 27 8.3
03_04_0081 + 17130557-17130964,17130971-17131085,17131239-171312... 27 8.3
03_04_0001 - 16208401-16208778 27 8.3
>09_01_0066 -
978018-978500,978588-979034,979113-979412,979521-979855,
980325-980703
Length = 647
Score = 31.1 bits (67), Expect = 0.68
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = -3
Query: 372 RGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVQ 196
R C S L P ++ SA + P+ C L+ P F L A+G P PE +
Sbjct: 464 RSSCASTELAENPTSVDSAVDHITEPTSCTLIVRVMP----TFTVLAAEGLAYKPTPETR 519
Query: 195 SE-LSVRAPCASLR 157
+RA CA ++
Sbjct: 520 VHGAQLRADCAKVQ 533
>04_02_0006 + 8455219-8457469,8457560-8457924
Length = 871
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = -3
Query: 408 FTWPAAVTLSPNRGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSL 235
F P +V+L N+G+C ++ + P SS PA + LL+K I + +F +L
Sbjct: 437 FQRPNSVSLEGNKGLCANIHILNLPICPSS--PAKTKNNKRLLLKVIPSITIALFSAL 492
>03_06_0262 +
32730927-32731634,32731713-32732159,32732247-32733133,
32733212-32733382,32733465-32733753,32733839-32733877,
32733983-32734021
Length = 859
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = -3
Query: 372 RGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVQ 196
R C S L P ++ SA + P+ C L P F L A+G P PE +
Sbjct: 362 RSSCASTELAENPTSVDSAVDHITEPTSCTLTVRVMP----TFTVLAAEGLAYKPTPETR 417
Query: 195 SE-LSVRAPCASLR 157
+RA CA ++
Sbjct: 418 VHGAQLRADCAKVQ 431
>12_02_0412 - 18799217-18801061
Length = 614
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 518 VYSAPDSVEVGYXSDIWHISGGESLRCDVVVIVGGRDSLG 399
+YS+ +E G D+W+I GG L V+ + R S G
Sbjct: 23 IYSSETDLEEGVFHDVWNICGGMPLAMIVIAGMLNRKSPG 62
>07_03_0342 +
16963528-16963598,16963668-16964235,16964350-16964760,
16964848-16965051,16968663-16969032,16972466-16972601,
16972680-16972779,16972933-16973190,16973276-16973314,
16973420-16973458
Length = 731
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Frame = -3
Query: 372 RGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLT--PAPEV 199
R C S L P ++ SA + P+ C L P T ++PA L P PE
Sbjct: 327 RSSCASTELAENPTSVDSAVDHITEPTSCTLTVRVMP---TFTFTVPAAEGLAYKPTPET 383
Query: 198 QSE-LSVRAPCA 166
+ +RA CA
Sbjct: 384 RVHGAQLRADCA 395
>05_04_0434 - 21188640-21188963
Length = 107
Score = 29.5 bits (63), Expect = 2.1
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Frame = +2
Query: 167 AHGALTLNSDCTSGAGVKVPFAGNDKNIVSA--IGSLDLTNR-QKLGAATAGVALDNVNG 337
AHGA L G +V AGN NI+ + +G D + +A+A D G
Sbjct: 19 AHGARVLEERMWRPVGARVVSAGNWPNILDSLPLGEPDFAGAGGPVASASASAGADGKKG 78
Query: 338 HGVSLTDTHIPRFGDK 385
G H RFG++
Sbjct: 79 SGA--FGVHGERFGER 92
>10_03_0036 -
7286425-7286463,7286686-7286974,7287306-7288192,
7288280-7288726,7288805-7288830,7288984-7289512
Length = 738
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = -3
Query: 372 RGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVQ 196
R C S LT P ++ SA + P+ C L P F A+G P PE +
Sbjct: 311 RSSCASTELTENPTSVDSAVDYITEPTSCTLTVRVMP----TFTVPAAEGLAYKPTPETR 366
Query: 195 SE-LSVRAPCASLR 157
+RA CA ++
Sbjct: 367 VHGAQLRADCAKVQ 380
>10_01_0169 -
1899491-1899666,1901358-1901638,1902468-1902477,
1902696-1902786,1903993-1904031,1904117-1904405,
1904488-1904658,1904737-1905623,1905711-1906157,
1906236-1906460,1906536-1906943
Length = 1007
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = -3
Query: 372 RGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVQ 196
R C S L P + SA + P+ C L P F L A+G P PE +
Sbjct: 337 RSSCASTELAENPTLVDSAVDHITEPTSCTLTVRVMP----TFTVLAAEGLAYKPTPETR 392
Query: 195 SE-LSVRAPCASLR 157
+RA CA ++
Sbjct: 393 VHGAQLRADCAKVQ 406
>07_03_1455 - 26659480-26659758,26659907-26660149
Length = 173
Score = 29.1 bits (62), Expect = 2.7
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Frame = +1
Query: 289 ETRRCNRWSGTG*CKRPRSKSHGYTHPPVRRQGDSCRPSESLPPTITTTSQR-----RLS 453
+TRRC+R G + P + S T PP+R RP+ PP + L
Sbjct: 68 DTRRCSRCR-PGDHRNPAASSLHPTAPPLRAGPGHLRPATRRPPRQVRPKENPDWTVSLR 126
Query: 454 PPEICQI--SLMYPTST 498
PPE+ + S + PT T
Sbjct: 127 PPELPLLTSSRLNPTET 143
>12_02_0591 + 20864861-20867329
Length = 822
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -2
Query: 466 IFLVAKAFAV--MSW*SLVEEIHLAGSCHLVSEPGDVCIRETY 344
+FL+ KA +S+ L++ + AG CHL EPG V +R +
Sbjct: 277 LFLMEKAMWEWEVSYGRLLQRV--AGECHLAGEPGLVAVRRFF 317
>11_04_0039 +
12679350-12680057,12680136-12680582,12680670-12681556,
12681635-12681805,12681872-12682160,12682390-12682428
Length = 846
Score = 28.3 bits (60), Expect = 4.8
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = -3
Query: 372 RGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVQ 196
R C S L P ++ SA + P+ C L + LT F L +G P PE +
Sbjct: 362 RSSCASTELAENPTSVDSAVDHITEPTSCTLTVR---VMLT-FTVLATEGLAYKPTPETR 417
Query: 195 SE-LSVRAPCASLR 157
+RA CA ++
Sbjct: 418 VHGAQLRADCAKVQ 431
>07_03_0115 - 13574601-13574645,13574710-13574781,13575990-13576469
Length = 198
Score = 28.3 bits (60), Expect = 4.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 429 GNRWWKRFTWPAAVTLSPNR 370
G RWW+R+ W A +L+ R
Sbjct: 4 GGRWWRRWRWGGASSLARTR 23
>11_03_0217 -
11828305-11828343,11828449-11828487,11828573-11828861,
11828944-11829114,11829193-11830079,11830167-11830346,
11830692-11831399
Length = 770
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = -3
Query: 372 RGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLT--PAPEV 199
R C S L P ++ S + P+ C L+ + + + ++PA L P PE
Sbjct: 273 RSSCTSTELAENPTSVDSTVDHITKPTSCTLI-----VRVMLTFTVPAAEGLAYKPTPET 327
Query: 198 QSE-LSVRAPCASLR 157
+ +RA CA ++
Sbjct: 328 RVHGAQLRADCAKVQ 342
>02_03_0247 -
16809742-16809780,16810070-16810298,16810381-16810551,
16810630-16811516,16811604-16812050,16812129-16812836
Length = 826
Score = 27.9 bits (59), Expect = 6.3
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = -3
Query: 363 CVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVQSE- 190
C S L P ++ SA + P+ C L P F L A+G P PE
Sbjct: 365 CASTELAENPTSIDSAVDHITEPTSCTLTVRVMP----TFTVLAAEGLAYKPTPETTVHG 420
Query: 189 LSVRAPCASLR 157
+RA CA ++
Sbjct: 421 AQLRADCAKVQ 431
>08_01_1037 -
10536547-10536585,10536814-10537102,10537202-10537327,
10537336-10538291,10538379-10538825,10538904-10539632
Length = 861
Score = 27.5 bits (58), Expect = 8.3
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = -3
Query: 372 RGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVQ 196
R C S L P ++ S + P+ C L+ P F L A+G P P+ +
Sbjct: 369 RSSCASTELAENPTSVDSTVDHIMEPTSCTLIVRVMP----TFTVLAAEGLAYKPTPKTR 424
Query: 195 SE-LSVRAPCASLR 157
+RA CA ++
Sbjct: 425 VHGAQLRADCAKVQ 438
>07_01_1161 -
10991245-10991283,10991389-10991427,10991513-10991738,
10991902-10992054,10992133-10992638,10992651-10993019,
10993107-10993553,10993752-10994339
Length = 788
Score = 27.5 bits (58), Expect = 8.3
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Frame = -3
Query: 372 RGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLT--PAPEV 199
R C S L P ++ SA + P+ C L P ++PA L P PE
Sbjct: 322 RSSCASTELAENPTSVDSAVDHITEPTSCTLTVRVMPT-----FTIPAAEGLAYKPTPET 376
Query: 198 QSE-LSVRAPCASLR 157
+ +RA CA ++
Sbjct: 377 RVHGAQLRADCAKVQ 391
>03_04_0081 +
17130557-17130964,17130971-17131085,17131239-17131264,
17131508-17131789,17131877-17132600,17132608-17132830,
17132909-17133079,17133162-17133450,17133536-17133574,
17133680-17133718
Length = 771
Score = 27.5 bits (58), Expect = 8.3
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = -3
Query: 372 RGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVQ 196
R C S L P ++ SA + P+ C L P F A+G P PE +
Sbjct: 254 RSSCASTELAESPTSVDSAVDHITEPTSCTLTVRVMP----TFTVPAAEGLAYKPTPETR 309
Query: 195 SE-LSVRAPCASLR 157
+RA CA ++
Sbjct: 310 VHGAQLRADCAKVQ 323
>03_04_0001 - 16208401-16208778
Length = 125
Score = 27.5 bits (58), Expect = 8.3
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = -3
Query: 348 LTPWPFTL---SSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVQSELSVR 178
++P P +L + A+P A + L +A T F + + G L P P Q+ L+V
Sbjct: 24 ISPLPLSLPLRAQASPEAVAVALVLPRADPAEVAATAFPTSGSGGPLPPPPSSQASLAVD 83
Query: 177 APCASLRT 154
A+ T
Sbjct: 84 PTAAASPT 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,827,187
Number of Sequences: 37544
Number of extensions: 344556
Number of successful extensions: 1141
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -