Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_C06
(518 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 33 0.034
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 28 0.96
SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomy... 28 0.96
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 26 3.9
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 25 5.1
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce... 25 9.0
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 25 9.0
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 25 9.0
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 9.0
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|... 25 9.0
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 25 9.0
>SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 156
Score = 32.7 bits (71), Expect = 0.034
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +2
Query: 20 MFGKIVFLLLVALCVGVQSRYLIVSEPVYYIQHYEEPELLTSSRV 154
MFGK+ LL+ A + +Q + + P+ ++H E ELL ++RV
Sbjct: 1 MFGKVSSLLVFASFLIIQGAFATLVAPIGDLEHLSEIELLYTNRV 45
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 27.9 bits (59), Expect = 0.96
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 149 RVRRDAHGALTLNSDGTSGAGVKVPFAGNDKNIVSAI-GSLDLTNRQKLGAATAGVALDN 325
R+ RD + N DGTSGA + F G K + + S D+++ K AA VALD
Sbjct: 442 RIVRDIADVIEDNMDGTSGALYAIFFHGFAKGMKDTLEKSKDISS--KTWAAGLKVALDT 499
Query: 326 V 328
+
Sbjct: 500 L 500
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 305 AGVALDNVNGHGVSLTDTHIPG 370
A A+DN+ G SL H+PG
Sbjct: 178 AKAAIDNLVSIGASLAHVHVPG 199
>SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 194
Score = 27.9 bits (59), Expect = 0.96
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 21 CSGRSSFYCLSLCASAFKAD 80
C G SSFYCLS+ +K D
Sbjct: 132 CQGYSSFYCLSIFDRYYKPD 151
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.8 bits (54), Expect = 3.9
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -3
Query: 312 TPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSELSVRAPCASLRTLELVN 136
TP + APS S ++ + ++ P + T +P+P + S S +P SLR L
Sbjct: 299 TPGIDAPSDLEAKFSDLGVSSVVSVTSPLQSCTNSPSPPLSSPASSASPSESLRNESLGI 358
Query: 135 SSGSS 121
S S
Sbjct: 359 KSAKS 363
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 5.1
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -3
Query: 333 PFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVPSE 187
P T S++ V++ S + T+ ++ PA + TP P PS+
Sbjct: 155 PSTTDSSSTDVSSSDSVSTSASSSNASNTVSVTSPASSSATPLPNQPSQ 203
>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 324
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 11 YTNMFGKIVFLLLVALCVGVQSRYLIVSEPVYYI 112
+T++FG IVFL + + R +E VY I
Sbjct: 93 WTHLFGAIVFLFFIFKSELILKRDTTTAEDVYVI 126
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = -3
Query: 336 WPFTLSSATPAVAAPSFCLLVKSKEPI-ALTIFLSLPAKGTLTPAPEVPSELS 181
+PF S P PS+ LV P LT+ + G L+ A +PS S
Sbjct: 271 YPFQQPSYNPNALVPSYTTLVSQLPPSPCLTV-----SSGPLSTASSIPSNCS 318
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 237 SLPAKGTLTPAPEVPSELSVRAPCASLRTLELVNS 133
S+P G P VP + S +A SLRT ++ S
Sbjct: 210 SIPKVGETYNDPSVPKDFSRKAIHESLRTKNILQS 244
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 237 SLPAKGTLTPAPEVPSE 187
SLPA GT TP+P V +
Sbjct: 725 SLPAAGTATPSPVVSQQ 741
>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 467
Score = 24.6 bits (51), Expect = 9.0
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = -3
Query: 426 VVIVVEEIHFAGSCHLSPNPGMCVSVRLTPWPFTLSSATPAVAAP---SFCLLVKSKEPI 256
+V + +IHF+G+C+ S G S L S P V P +F ++ S+ P
Sbjct: 397 IVSIPHQIHFSGTCY-SVAAGGWQSAALA----ISESVLPEVNVPPITTFSIIRPSRVP- 450
Query: 255 ALTIFLSLPAKGTL 214
AL FL+ PA TL
Sbjct: 451 ALR-FLAAPATRTL 463
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +1
Query: 328 KRPRSKSHGYTHPRVRRKVTAAGKVNLFHNDXHDITAKAFATRNMPDI 471
+R RS + Y V+R +GK F N+ H + + R +P I
Sbjct: 90 RRKRSIDNDYELSNVKRNDITSGKNREFENEHHP-ASDTSSWRELPSI 136
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,369
Number of Sequences: 5004
Number of extensions: 41118
Number of successful extensions: 122
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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