Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_C06
(518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1455 + 27230134-27231110,27231195-27231327,27231417-272315... 32 0.24
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 29 2.2
02_04_0519 + 23619084-23619198,23619468-23619559,23619655-236197... 29 2.2
09_01_0066 - 978018-978500,978588-979034,979113-979412,979521-97... 28 3.9
05_04_0434 - 21188640-21188963 28 3.9
12_02_0412 - 18799217-18801061 28 5.2
05_04_0113 + 18085705-18085833,18086442-18086885 28 5.2
02_03_0247 - 16809742-16809780,16810070-16810298,16810381-168105... 28 5.2
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417... 27 6.8
02_02_0464 - 10552347-10552466,10552683-10552928,10553866-105541... 27 6.8
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 27 9.0
09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724... 27 9.0
03_06_0262 + 32730927-32731634,32731713-32732159,32732247-327331... 27 9.0
03_04_0001 - 16208401-16208778 27 9.0
01_01_0070 - 542603-542686,542803-543441 27 9.0
>08_02_1455 +
27230134-27231110,27231195-27231327,27231417-27231501,
27233372-27233571
Length = 464
Score = 32.3 bits (70), Expect = 0.24
Identities = 28/75 (37%), Positives = 34/75 (45%)
Frame = -3
Query: 384 HLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPA 205
HLSP G V +P P LSSA A AA S+ L S P A P +P
Sbjct: 15 HLSP--GQPPVVPRSPTPLDLSSAAAAAAAASYRRLSPSLRPPA------HPQARLPSPY 66
Query: 204 PEVPSELSVRAPCAS 160
P++PS S A +S
Sbjct: 67 PQIPSSSSAAAAGSS 81
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 328 KRPRSKSHGYTHPRVRRKVTAAGKVNLFHNDXHD 429
+R R + H ++HP R + +G N H+D D
Sbjct: 223 RRLRHRHHSHSHPNARSPSSRSGATNHHHDDDGD 256
>02_04_0519 +
23619084-23619198,23619468-23619559,23619655-23619735,
23620426-23620501,23620674-23620696
Length = 128
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 482 GTXAISGIFLVAKAFAVMSWXSLWKRFTLPAAVTFLRT 369
G A+ IF + ++ W S+W+ FT A + +L T
Sbjct: 63 GLLALGNIFFLTGIGLLLGWQSMWQLFTKKANIKWLWT 100
>09_01_0066 -
978018-978500,978588-979034,979113-979412,979521-979855,
980325-980703
Length = 647
Score = 28.3 bits (60), Expect = 3.9
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = -3
Query: 360 CVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSE- 187
C S L P ++ SA + P+ C L+ P F L A+G P PE
Sbjct: 467 CASTELAENPTSVDSAVDHITEPTSCTLIVRVMP----TFTVLAAEGLAYKPTPETRVHG 522
Query: 186 LSVRAPCASLR 154
+RA CA ++
Sbjct: 523 AQLRADCAKVQ 533
>05_04_0434 - 21188640-21188963
Length = 107
Score = 28.3 bits (60), Expect = 3.9
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Frame = +2
Query: 164 AHGALTLNSDGTSGAGVKVPFAGNDKNIVSA--IGSLDLTNR-QKLGAATAGVALDNVNG 334
AHGA L G +V AGN NI+ + +G D + +A+A D G
Sbjct: 19 AHGARVLEERMWRPVGARVVSAGNWPNILDSLPLGEPDFAGAGGPVASASASAGADGKKG 78
Query: 335 HGVSLTDTHIPGFGER 382
G H FGER
Sbjct: 79 SGA--FGVHGERFGER 92
>12_02_0412 - 18799217-18801061
Length = 614
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 513 VYSATDSVEVGYXSDIWHISGGESLRCDVV 424
+YS+ +E G D+W+I GG L V+
Sbjct: 23 IYSSETDLEEGVFHDVWNICGGMPLAMIVI 52
>05_04_0113 + 18085705-18085833,18086442-18086885
Length = 190
Score = 27.9 bits (59), Expect = 5.2
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Frame = +2
Query: 122 EEPELLTSSRVRRDAHGALTLNSD-------GTSGAGVKVPFAGNDKNIVSAIGSLDL-- 274
E+ TS+R R G LT+ ++ G GAG ++P AG D + G +
Sbjct: 30 EDSPAATSTRKRLVGSGKLTIVAEIPRLALGGGGGAGERLPAAGEDSAAATNTGKCQVVG 89
Query: 275 TNRQKLGAATAGVALD 322
++ + AA+AG+ D
Sbjct: 90 SSLAAMVAASAGIQPD 105
>02_03_0247 -
16809742-16809780,16810070-16810298,16810381-16810551,
16810630-16811516,16811604-16812050,16812129-16812836
Length = 826
Score = 27.9 bits (59), Expect = 5.2
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = -3
Query: 360 CVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSE- 187
C S L P ++ SA + P+ C L P F L A+G P PE
Sbjct: 365 CASTELAENPTSIDSAVDHITEPTSCTLTVRVMP----TFTVLAAEGLAYKPTPETTVHG 420
Query: 186 LSVRAPCASLR 154
+RA CA ++
Sbjct: 421 AQLRADCAKVQ 431
>03_05_0520 +
25139314-25139364,25139580-25139711,25141594-25141731,
25143191-25143241,25143662-25143751,25143854-25144000,
25144108-25144218,25144307-25144375,25144777-25145517,
25145840-25146004,25146376-25146442,25146580-25146704,
25148714-25148983,25149065-25149199,25149316-25149497,
25149669-25149744
Length = 849
Score = 27.5 bits (58), Expect = 6.8
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -3
Query: 333 PFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPE-VPSELSVRAPCASL 157
P T+S++T AV+ + + + + T LPA T APE +P+ S AP S
Sbjct: 310 PTTISTSTAAVSVSAETISSPVRPIVPTTTAAVLPASVTARSAPENIPAVTS--APANSS 367
Query: 156 RTLE 145
TL+
Sbjct: 368 STLK 371
>02_02_0464 -
10552347-10552466,10552683-10552928,10553866-10554135,
10554231-10554413,10554493-10554688,10554775-10555079,
10555515-10555604,10555689-10555806,10555991-10556088,
10556187-10556272,10557622-10557736
Length = 608
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 430 CRGXRCGRDSLCRQLSPFSEPGDVCIRETYSVAVYII 320
CR +CG+ CR+ P + G CI T S V +I
Sbjct: 20 CRPSKCGQQ--CRKRCPVNATGRQCIEVTPSSRVSLI 54
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 27.1 bits (57), Expect = 9.0
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Frame = +2
Query: 95 EPVY--YIQHYE---EPELLTSSRVRRDAHGALTLNSDGTSGAGVKVPFAGND 238
EP Y + HY PEL+ R DA G + L D G +P G D
Sbjct: 157 EPFYGTKVSHYPPCPRPELVDGLRAHTDAGGLILLFQDDRFGGLQMIPNRGGD 209
>09_02_0322 -
7240125-7241568,7242043-7243253,7245782-7246144,
7246502-7246522
Length = 1012
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 237 SLPAKGTLTPAPEVPSELSVRAP 169
S+P + +L PAP S+L V AP
Sbjct: 870 SIPVQNSLPPAPPSASQLQVHAP 892
>03_06_0262 +
32730927-32731634,32731713-32732159,32732247-32733133,
32733212-32733382,32733465-32733753,32733839-32733877,
32733983-32734021
Length = 859
Score = 27.1 bits (57), Expect = 9.0
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = -3
Query: 360 CVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSE- 187
C S L P ++ SA + P+ C L P F L A+G P PE
Sbjct: 365 CASTELAENPTSVDSAVDHITEPTSCTLTVRVMP----TFTVLAAEGLAYKPTPETRVHG 420
Query: 186 LSVRAPCASLR 154
+RA CA ++
Sbjct: 421 AQLRADCAKVQ 431
>03_04_0001 - 16208401-16208778
Length = 125
Score = 27.1 bits (57), Expect = 9.0
Identities = 29/97 (29%), Positives = 42/97 (43%)
Frame = -3
Query: 441 LRCDVVVIVVEEIHFAGSCHLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKE 262
LR D+V VVE GS +SP P +S+ L + A+P A + L
Sbjct: 6 LRADLVEAVVEVFSAGGS--ISPLP---LSLPLR------AQASPEAVAVALVLPRADPA 54
Query: 261 PIALTIFLSLPAKGTLTPAPEVPSELSVRAPCASLRT 151
+A T F + + G L P P + L+V A+ T
Sbjct: 55 EVAATAFPTSGSGGPLPPPPSSQASLAVDPTAAASPT 91
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 27.1 bits (57), Expect = 9.0
Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Frame = -3
Query: 345 LTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIF--LSLPAKGTLTPAPEVPSEL-SVR 175
+TP P T +P A P L + P+A +LP T P E P+EL
Sbjct: 100 VTPPPVTPPPVSPPPATPPPALPPSTPPPVAAPAEAPAALPPATTPPPVAEAPAELPPAE 159
Query: 174 APCASLRTLELVNSSG 127
AP S N G
Sbjct: 160 APTKSKNKHRKKNKRG 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,309,031
Number of Sequences: 37544
Number of extensions: 298467
Number of successful extensions: 968
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -