Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_C04
(609 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po... 97 2e-21
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar... 64 1e-11
SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch... 56 4e-09
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 1.6
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 27 2.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.1
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 27 2.8
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 26 3.7
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ... 26 3.7
SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c... 26 5.0
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 6.5
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo... 25 8.7
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 8.7
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 25 8.7
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 25 8.7
>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 368
Score = 96.7 bits (230), Expect = 2e-21
Identities = 59/193 (30%), Positives = 91/193 (47%), Gaps = 12/193 (6%)
Frame = +1
Query: 61 LRWGIVTAGKISHDFVNAVNSFPDK---RDQTIVXXXXXXXXXXXXXXXTHKIP---KVY 222
+ WG + AG I+ F + P++ + + + H P K Y
Sbjct: 11 IHWGFLGAGSIAAVFAKDLVGVPERHKVQHEIVAVATRDSEHRASSFAKNHCAPCKPKAY 70
Query: 223 ESYEAMATSTDINIVYIGALNPDHYRLAKLYLENGKHVLCEKPLCLNYKQAESLINFARS 402
SYE + ++IVYI + +P HY + KL L N K VLCEKPL +NY +A L+ AR+
Sbjct: 71 GSYEELVKDDKVDIVYISSTHPQHYEVVKLALLNDKAVLCEKPLTINYPEALELVELARA 130
Query: 403 KKLFLMEAVWSRFAPSYLALEEEINSG-ILGD--VEFVEVTYGVPIVDVP---RVGLKEL 564
+ LF E W RF P A + ++ + GD FV+ + ++P R+ L
Sbjct: 131 RNLFFAEGFWIRFYPIVKAAKTLLHEDRVCGDHFRLFVDFSQDFRFRELPSESRLRTVSL 190
Query: 565 GGSAI*DIGIYTL 603
G + D+G+Y L
Sbjct: 191 GAGVLLDMGVYPL 203
>SPAC26H5.09c |||GFO/IDH/MocA family
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 369
Score = 64.5 bits (150), Expect = 1e-11
Identities = 35/95 (36%), Positives = 49/95 (51%)
Frame = +1
Query: 214 KVYESYEAMATSTDINIVYIGALNPDHYRLAKLYLENGKHVLCEKPLCLNYKQAESLINF 393
KVY + + ++I +V I HY + L GKHVLCEKP Y +A+ L +
Sbjct: 55 KVYTKLDELLADSNIELVVISLPPNVHYEVVSQALNAGKHVLCEKPFTPTYGEAKELFDL 114
Query: 394 ARSKKLFLMEAVWSRFAPSYLALEEEINSGILGDV 498
A+SK L L RF +L +E I +G LG+V
Sbjct: 115 AKSKNLMLTVYQNRRFDGDFLTAKECIENGRLGEV 149
>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 368
Score = 56.0 bits (129), Expect = 4e-09
Identities = 31/94 (32%), Positives = 46/94 (48%)
Frame = +1
Query: 217 VYESYEAMATSTDINIVYIGALNPDHYRLAKLYLENGKHVLCEKPLCLNYKQAESLINFA 396
VY + + + +I +V + H + K L GKHV+CEKP Y++A+ L A
Sbjct: 56 VYTNLDELLADVNIELVVVSLPPNVHSEIVKKALNAGKHVVCEKPFTPTYEEAKELYELA 115
Query: 397 RSKKLFLMEAVWSRFAPSYLALEEEINSGILGDV 498
SK L L R+ +L ++ I SG LG V
Sbjct: 116 ESKSLLLAIYQNRRWDGDFLTAKKIIESGRLGQV 149
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 316 LENGKHVLCEKPLCLNYKQAESLINFARSKKLFLMEAVWSRFAPSYLA 459
++N +L +KP LNY N L + VW++ SY A
Sbjct: 2485 IDNEDRMLTKKPCALNYTNLTKWCNAHDVTLQVLGQLVWAKILASYCA 2532
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 244 WPLLRRIRKLWVFY-ECRQTHGHCRRYGLRQQ 152
W L+ +R + ECR ++GH RR G R +
Sbjct: 1242 WQLVESVRHISTMRCECRLSYGHTRRNGERNR 1273
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 575 ALPPSSFNPTLGTSTIGTPYVTSTNSTSPNIPELISSS 462
++PP+ + +L T T TST+STS IP +SS
Sbjct: 120 SIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSS 157
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 575 ALPPSSFNPTLGTSTIGTPYVTSTNSTSPNIPELISSS 462
++PP+ + +L T T TST+STS IP +SS
Sbjct: 177 SIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSS 214
Score = 27.1 bits (57), Expect = 2.1
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = -2
Query: 593 IPISYMALPPSSFNPTLGTSTIGTPYV-----TSTNSTSPNIPELISSS 462
+P + + S+ PT G+S++ TP TST+STS IP +SS
Sbjct: 222 LPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSS 270
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 241 PLLRRIRKLWVFYECRQTHGHCRRYGLRQQRLFDLF 134
PLLRR LW+FY R +C RL D++
Sbjct: 859 PLLRRASSLWLFYIVR----YCEPQTYTMTRLNDIY 890
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -2
Query: 536 STIGTPYVTSTNSTSPN 486
++IGTPY++S NS S N
Sbjct: 114 NSIGTPYLSSRNSNSAN 130
>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 316 LENGKHVLCEKPLCLNYKQAESLINFARSKKLFLMEAVWSRFAPSYLA 459
LENG + KPL +++ + S+ + A+ + EAV+ LA
Sbjct: 146 LENGTVITATKPLLISHHRISSITSTAKWVLVIEKEAVFQTLTEEALA 193
>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 429
Score = 25.8 bits (54), Expect = 5.0
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Frame = +1
Query: 262 IVYIGALNPDHYRLAKLYLENGKHVLCEKPLCLNYKQAESLINFAR--SKKLFLMEAVWS 435
+ Y G + ++LAK YL+NG + Q+ ++N + S+ + +A
Sbjct: 320 VSYPGLESHVSHKLAKKYLKNGYGAVLSFGAKGGPDQSRKVVNALKLASQLANVGDAKTL 379
Query: 436 RFAPSY-----LALEEEINSGILGDVEFVEVTYGVPIVD 537
AP+Y L EE+I++G+ D+ + V G+ +D
Sbjct: 380 VIAPAYTTHLQLTDEEQISAGVTKDL--IRVAVGIEHID 416
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 566 PSSFNPTLGTSTIGTPYVTSTNSTSPN 486
P F PTLG +T Y +T+S PN
Sbjct: 260 PRVFGPTLGYNTPPFGYPPTTSSALPN 286
>SPAC23G3.05c |||regulator of G-protein signaling
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 343
Score = 25.0 bits (52), Expect = 8.7
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Frame = +1
Query: 229 YEAMATSTDINIVYIGALNPDH---YRLAKLYLENGKHVLCEK--PLCLNYKQAESLIN 390
Y+A TST +N L P H +R A L LE+ V PL L E IN
Sbjct: 59 YKAGVTSTSLNTESSSTLGPHHFTRFRSASLSLEDLSTVYWPNFGPLLLEELSNEQTIN 117
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.0 bits (52), Expect = 8.7
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = -2
Query: 563 SSFNPTLGTSTIGTPY--VTSTNSTSPNIPELISSSKAR*DGANRDHTASIRN 411
SS N T TST TP V ST +TS + L S + A+ S+ +
Sbjct: 328 SSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNS 380
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 25.0 bits (52), Expect = 8.7
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -3
Query: 79 LLCPSEVPSCSACAIARN 26
++CP+E P AC + +N
Sbjct: 507 MVCPAETPEGQACGLVKN 524
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 460 LEEEINSGILGDVEFVEVTYGVPIVDVP 543
L+E +N+ LG+VEF+ V ++ P
Sbjct: 55 LDEFLNTAELGEVEFIAEKQNVTVIQNP 82
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,120
Number of Sequences: 5004
Number of extensions: 53323
Number of successful extensions: 204
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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