Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_C04
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0311 - 2753062-2753232,2753340-2753381,2754490-2754667,275...    47   1e-05
12_02_0986 + 25055674-25056571,25057741-25057782,25058651-25059888     28   6.7  
03_02_0762 - 10968888-10969466,10972522-10974175,10974277-109743...    28   6.7  
01_04_0127 + 16417902-16418624                                         28   6.7  
03_01_0228 + 1802038-1803265,1804207-1804245,1804638-1804783,180...    27   8.8  

>08_01_0311 -
           2753062-2753232,2753340-2753381,2754490-2754667,
           2755021-2755118,2755964-2756098,2756280-2756444,
           2756529-2756693,2757082-2757299,2758508-2758811
          Length = 491

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
 Frame = +1

Query: 214 KVYESYEAMATSTDINIVYIGALNPDHYRLAKLYLENGK--HVLCEKPLCLNYKQAESLI 387
           K++  +  +  S   + V + + N  HY++    + + K  H+L EKPLC   +  + ++
Sbjct: 117 KIFSGHGELLDSGLCDAVVVSSPNMTHYQILMDIISHAKPHHILVEKPLCTTVQDCQKVV 176

Query: 388 NFARSKKLFLME-AVWSRFAPSYLALEEEINSGILGDVEFVEV 513
             A+ +   L++  +  R+ P    L + + SG LG V  V +
Sbjct: 177 EAAKQRSDILVQVGLEYRYMPPVAKLIDTVKSGTLGQVRMVAI 219


>12_02_0986 + 25055674-25056571,25057741-25057782,25058651-25059888
          Length = 725

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -2

Query: 578 MALPPSSFNPT--LGTSTIGTPYVTSTNSTSPNIPELISSSKAR*DGANRDHTASIRNNF 405
           +A   +SF+ T  LGT   GT YV    ++SP++  +    +   DG +    A + N  
Sbjct: 370 VARATNSFSHTHRLGTGAYGTVYVGKLPASSPSLVAIKRMRRRHDDGDDDAAVAVLLNEV 429

Query: 404 LLLAKL 387
            L++ L
Sbjct: 430 KLISSL 435


>03_02_0762 -
           10968888-10969466,10972522-10974175,10974277-10974359,
           10974435-10974533,10974620-10974706,10974782-10974838,
           10974939-10975065,10975344-10975465,10975685-10975732,
           10975867-10976268
          Length = 1085

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 375 RKSNQLCEKQEVIPYG 422
           R  NQLCEKQE +P G
Sbjct: 557 RVHNQLCEKQEYLPLG 572


>01_04_0127 + 16417902-16418624
          Length = 240

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = -2

Query: 575 ALPPSSFNPTLGTSTIGTPYVTSTNSTSPNIPELI--SSSKAR*DGANRDHTASIRNNFL 402
           A PP +    + ++T G     +TN+ +P+ P+ +  S++ ++ D A +  T  +  +  
Sbjct: 3   ASPPGAIVINMASNTNGESTAVTTNNLAPSTPKAVDESTTSSKTDVATKTVTDKVMASTA 62

Query: 401 LLAKLI 384
            LA+L+
Sbjct: 63  NLAQLL 68


>03_01_0228 +
           1802038-1803265,1804207-1804245,1804638-1804783,
           1804891-1804958,1805045-1805147,1805287-1805400
          Length = 565

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 80  QQGRYLMILLMLSTHFPTKEIKQSLLSQPVTSAMPVRLPALI 205
           ++G   +IL   S HFP   +    L   +T+A P+  PA I
Sbjct: 87  RKGHVALILSPNSVHFPVAALAAMSLGAVLTTANPLNTPAEI 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,203,002
Number of Sequences: 37544
Number of extensions: 323451
Number of successful extensions: 841
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)