Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_C04
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93372-3|CAB07545.1|  601|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z92808-4|CAD54148.1|  928|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z92808-3|CAB07268.1|  946|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z81476-15|CAD54124.1|  928|Caenorhabditis elegans Hypothetical p...    29   2.6  
Z81476-14|CAB03924.1|  946|Caenorhabditis elegans Hypothetical p...    29   2.6  
Z81464-1|CAE17676.1|  131|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical ...    29   3.4  
U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z81048-2|CAB02840.1|  553|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AY255668-1|AAQ96605.1|  167|Caenorhabditis elegans MiRP5 protein.      27   7.9  
AF098994-1|AAC67472.2|  167|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z93372-3|CAB07545.1|  601|Caenorhabditis elegans Hypothetical
           protein BE10.3 protein.
          Length = 601

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -3

Query: 202 ECRQTHGHCRRYGLRQQRLFDLFCREMS*QH*QNHEISSLLL 77
           EC    G CR+YG  Q+ +FD+  +  +  H ++ E+S  LL
Sbjct: 175 ECGIIGGRCRKYGPIQENIFDITLK--TPHHFEHLEVSDTLL 214


>AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical
           protein K10B4.1 protein.
          Length = 1210

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = -2

Query: 581 YMALPPSSFNPTLGTSTIGTPYVTSTNSTSPNIPELISSSK 459
           +M      +NP+L +++  +   TS++S SPN+ E+IS  +
Sbjct: 358 FMTSSDKIYNPSLYSTSDFSTSPTSSSSKSPNVAEIISKGR 398


>Z92808-4|CAD54148.1|  928|Caenorhabditis elegans Hypothetical
           protein M04C3.1b protein.
          Length = 928

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +3

Query: 321 KWQTCTLREAIVFELQTSRKSNQLCEKQEVIPYGSSMVPVRSVLSCFRRRD*FGN 485
           KW+   L EA       + +   +C+ Q    +  +  P +  LSCF +++ FGN
Sbjct: 361 KWERIILYEANKISDMNTVRFQAICQLQAKYRWCLTESPKQQSLSCFLKQESFGN 415


>Z92808-3|CAB07268.1|  946|Caenorhabditis elegans Hypothetical
           protein M04C3.1a protein.
          Length = 946

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +3

Query: 321 KWQTCTLREAIVFELQTSRKSNQLCEKQEVIPYGSSMVPVRSVLSCFRRRD*FGN 485
           KW+   L EA       + +   +C+ Q    +  +  P +  LSCF +++ FGN
Sbjct: 361 KWERIILYEANKISDMNTVRFQAICQLQAKYRWCLTESPKQQSLSCFLKQESFGN 415


>Z81476-15|CAD54124.1|  928|Caenorhabditis elegans Hypothetical
           protein M04C3.1b protein.
          Length = 928

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +3

Query: 321 KWQTCTLREAIVFELQTSRKSNQLCEKQEVIPYGSSMVPVRSVLSCFRRRD*FGN 485
           KW+   L EA       + +   +C+ Q    +  +  P +  LSCF +++ FGN
Sbjct: 361 KWERIILYEANKISDMNTVRFQAICQLQAKYRWCLTESPKQQSLSCFLKQESFGN 415


>Z81476-14|CAB03924.1|  946|Caenorhabditis elegans Hypothetical
           protein M04C3.1a protein.
          Length = 946

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +3

Query: 321 KWQTCTLREAIVFELQTSRKSNQLCEKQEVIPYGSSMVPVRSVLSCFRRRD*FGN 485
           KW+   L EA       + +   +C+ Q    +  +  P +  LSCF +++ FGN
Sbjct: 361 KWERIILYEANKISDMNTVRFQAICQLQAKYRWCLTESPKQQSLSCFLKQESFGN 415


>Z81464-1|CAE17676.1|  131|Caenorhabditis elegans Hypothetical
           protein B0462.4 protein.
          Length = 131

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 551 PTLGTSTIGTPYVTSTNSTSPNIPELISSSKAR 453
           P L TST+ TP+ T    +SP+I  + S S+ +
Sbjct: 64  PVLPTSTMQTPHFTKNLHSSPSISRMASLSRVQ 96


>AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical
           protein Y44E3A.4 protein.
          Length = 511

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 587 ISYMALPPSSFNPTLGTSTIGTPYVTSTNSTSPNIPELISSSKA 456
           IS    PPS+  P   ++    P   +  STSP +P +  SS A
Sbjct: 295 ISVADPPPSTIAPAAPSAPAPAPSQLNPTSTSPTMPAIAPSSSA 338


>U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical
           protein C50E3.9 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 2/139 (1%)
 Frame = -1

Query: 516 CYFYELYVTQYSRINLFF*SKIRRSEPGPYCFHKE*LLASRKVD*TFC-LFVVQTQWLLA 340
           C+F+ + ++    +N F+    R      + FHK  +L    +    C +  + T  +  
Sbjct: 186 CHFFSIAISFVITLNYFYYCTFRNWHSRNFKFHKFGVLIFTFLFSIICAMSSILTSQIER 245

Query: 339 EYMFAIFKIKFGKSVVVRV*CADVNYIYICRCGHCFVGFVNFGYFMSAGKRT-GIADVTG 163
            +      + FGK+  +++    V  I+   C    +G++ F   MS  KRT G A+ + 
Sbjct: 246 IFQCKFGFLDFGKNENIQMIINRVTLIF--PCVSLIIGYLIFR--MSLKKRTSGAANHSK 301

Query: 162 CDSNDCLISFVGK*VDSIN 106
           C     L  FV   V ++N
Sbjct: 302 CKEKIVLPIFVTTLVYTVN 320


>Z81048-2|CAB02840.1|  553|Caenorhabditis elegans Hypothetical
           protein C41G7.3 protein.
          Length = 553

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 566 PSSFNPTLGTSTIGTPYVTSTNSTSP 489
           P+S  P  G ST G+P+ + ++ST+P
Sbjct: 316 PASNPPDSGFSTPGSPFTSDSSSTTP 341


>AY255668-1|AAQ96605.1|  167|Caenorhabditis elegans MiRP5 protein.
          Length = 167

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 590 PISYMALPPSSFNPTLGTSTIGTPYVTSTNSTSPNIPELI 471
           PI     PPSS  PT  ++T  + +  ST  T P +P+ +
Sbjct: 87  PIPPQPAPPSSPKPTEESATPSSSFAPSTEPT-PTVPDKV 125


>AF098994-1|AAC67472.2|  167|Caenorhabditis elegans Hypothetical
           protein T06A4.2 protein.
          Length = 167

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 590 PISYMALPPSSFNPTLGTSTIGTPYVTSTNSTSPNIPELI 471
           PI     PPSS  PT  ++T  + +  ST  T P +P+ +
Sbjct: 87  PIPPQPAPPSSPKPTEESATPSSSFAPSTEPT-PTVPDKV 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,271,182
Number of Sequences: 27780
Number of extensions: 299543
Number of successful extensions: 918
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)